BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG00990.1

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930998 jgi|Araly1|930998|scaffold_303455.1                        654    0.0  
  Ahg952661 jgi|Araly1|952661|scaffold_900012.1                       69.4    2e-11


> Ahg930998 jgi|Araly1|930998|scaffold_303455.1
Length=402

 Score =  654 bits (354),  Expect = 0.0
 Identities = 358/360 (99%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  1    ATGATGTCAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTG  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGATGTTAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTG  81

Query  61   ATCCTACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCTACCTACCCAGAAAAATTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   ATCCTACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCTACCTACCCAGAAAAATTG  141

Query  121  TCGGCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  TCGGCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGA  201

Query  181  TTTTATCTTGTTTCAATTTTATTTTTAATCCCTGATCTGGAAGTAACCTTTTTCTTTCCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  TTTTATCTTGTTTCAATTTTATTTTTAATCCCTGATCTGGAAGTAACCTTTTTCTTTCCT  261

Query  241  TGGGCAGTACCTCCCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTTTTA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  262  TGGGCAGTACCTCCCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTTTTA  321

Query  301  TTTATTTTGACGATTGGATTTCTATATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA  360
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  322  TTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA  381


> Ahg952661 jgi|Araly1|952661|scaffold_900012.1
Length=2242

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 61/72 (85%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  3    GATGTCAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTGAT  62
            ||||||| |||||| |||||   |   || ||||||||||||||||||||||||||||||
Sbjct  365  GATGTCACAATTTGAACCAAAGGC---CTTTTTAGTGATTAGTCTGCTAGTTTCTTTGAT  421

Query  63   CCTACTCGGTGT  74
            | || |||||||
Sbjct  422  CTTAGTCGGTGT  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12820277904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5