BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG01030.1

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936830 jgi|Araly1|936830|scaffold_501021.1                        593    2e-169


> Ahg936830 jgi|Araly1|936830|scaffold_501021.1
Length=518

 Score =  593 bits (321),  Expect = 2e-169
 Identities = 321/321 (100%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGCAACAGGTATTCCGTAGAGAAGGTATAAATCTATACTATTATTCAAACAAAACAAAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  ATGCAACAGGTATTCCGTAGAGAAGGTATAAATCTATACTATTATTCAAACAAAACAAAG  236

Query  61   AAGTTCTCTCTTGACTCTTGGTACCTGCCTCAGCTGCACCTACTCGAAAGCAAAGGAAAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  AAGTTCTCTCTTGACTCTTGGTACCTGCCTCAGCTGCACCTACTCGAAAGCAAAGGAAAC  296

Query  121  AAGAAAAGCAAGGCAGCTACGGACCAATACTTCATACATCCTTCCCGGACGAGACAAGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AAGAAAAGCAAGGCAGCTACGGACCAATACTTCATACATCCTTCCCGGACGAGACAAGAA  356

Query  181  AGGGATCTTACAGACAGGAAGCACCGCCCGGAACAGCAACAACTACAACGACGGGTAACT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357  AGGGATCTTACAGACAGGAAGCACCGCCCGGAACAGCAACAACTACAACGACGGGTAACT  416

Query  241  CGCTGGAAAAAAGAAGTCACAACTAGATCAAGACCTAAGGAGACTTCGAGCACACATCTT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  CGCTGGAAAAAAGAAGTCACAACTAGATCAAGACCTAAGGAGACTTCGAGCACACATCTT  476

Query  301  CCCTATCACGGCTCATACTAA  321
            |||||||||||||||||||||
Sbjct  477  CCCTATCACGGCTCATACTAA  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11332209933


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5