BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG01080.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484743 jgi|Araly1|484743|fgenesh2_kg.5__735__AT2G07671.1          449    7e-126
  Ahg927851 jgi|Araly1|927851|scaffold_300308.1                        331    3e-90 
  Ahg907436 jgi|Araly1|907436|Al_scaffold_0002_517                     230    1e-59 


> Ahg484743 jgi|Araly1|484743|fgenesh2_kg.5__735__AT2G07671.1
Length=457

 Score =  449 bits (243),  Expect = 7e-126
 Identities = 253/258 (98%), Gaps = 0/258 (0%)
 Strand=Plus/Plus

Query  247  ATGACAAAGCGTGAGTATAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATCAATAGGT  306
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGACAAAGCGTGAGTAGAATTCTCAACCCGAGATGTTAGAAGGTGCAAAATTAATAGGT  60

Query  307  GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTATTCAGT  366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   GCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTCTTCAGT  120

Query  367  TCTTTGATTCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCC  426
            |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  121  TCTTTGATCCATTCTGTGGCGCGAAATCCATCATTGGCTAAACAATTATTTGGTTATGCC  180

Query  427  ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTG  240

Query  487  ATCTTATTCGTATTCTGA  504
            ||||||||||||||||||
Sbjct  241  ATCTTATTCGTATTCTGA  258


> Ahg927851 jgi|Araly1|927851|scaffold_300308.1
Length=1143

 Score =  331 bits (179),  Expect = 3e-90
 Identities = 185/188 (98%), Gaps = 0/188 (0%)
 Strand=Plus/Plus

Query  279   GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC  338
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  956   GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC  1015

Query  339   TGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATTCATTCTGTGGCGCGAAATCCATC  398
             ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct  1016  TGCTATCGGTATTGGAAACGTCTTCAGTTCTTTGATCCATTCTGTGGCGTGAAATCCATC  1075

Query  399   ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC  458
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1076  ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC  1135

Query  459   ATTGTTTG  466
             ||||||||
Sbjct  1136  ATTGTTTG  1143


> Ahg907436 jgi|Araly1|907436|Al_scaffold_0002_517
Length=351

 Score =  230 bits (124),  Expect = 1e-59
 Identities = 137/143 (96%), Gaps = 2/143 (1%)
 Strand=Plus/Plus

Query  64   GTCATTCCCTCTGACGTCGAATGATCTACTTGCTTGTACTTCTCTTTGTCGAGAT-TCAG  122
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |  |
Sbjct  3    GTCATTCCCTCTGACGTCGAATGATCTACTTGCTTGTACTTATCTTTGTCGAGATGT-TG  61

Query  123  TTGGTCTTCAGTCTACCACTCCGTGGGTATAAGATCGCAAAGAATGCATTCCAAGTGAGA  182
            |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  62   TTGGTCTTCAGTATACCACTCCGTGGGTACAAGATCGCAAAGAATGCATTCCAAGTGAGA  121

Query  183  TGTCCAAGATCAAAGGAACGAGG  205
            |||||||||||||||||||||||
Sbjct  122  TGTCCAAGATCAAAGGAACGAGG  144



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5