BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATMG01190.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906439 jgi|Araly1|906439|Al_scaffold_0003_3567 1415 0.0
> Ahg906439 jgi|Araly1|906439|Al_scaffold_0003_3567
Length=840
Score = 1415 bits (766), Expect = 0.0
Identities = 770/772 (99%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 516 CCGACAAACTGGAAAAACGACTATTGCTATCGATACCATATTAAACCAAAAGCAAATAAA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CCGACAAACTGGAAAAACGACTATTGCTATCGATACCATATTAAACCAAAAGCAAATAAA 128
Query 576 CTCAAGGGCCACCTCTGAGAGTGAGACAATGTATTGTGTCTATGTAGCGATTGGACAGAA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CTCAAGGGCCACCTCTGAGAGTGAGACAATGTATTGTGTCTATGTAGCGATTGGACAGAA 188
Query 636 ACGCTCGACTGTGGGACAATTAATTCAAACTCTTGAAGAAGCGAATGCTTTGGAATATTC 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 ACGCTCGACTGTGGGACAATTAATTCAAACTCTTGAAGAAGCGAATGCTTTGGAATATTC 248
Query 696 CATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTTTGGCCCCATATTC 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTTTGGCCCCATATTC 308
Query 756 CGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGA 368
Query 816 TGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACC 428
Query 876 AGGCCGTGAGGCTTTCCCAGGTGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGC 935
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGGCCGTGAGGCTTTTCCAGGTGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGC 488
Query 936 GGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAAC 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAAC 548
Query 996 ACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACA 608
Query 1056 AATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTT 668
Query 1116 ATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTATGCGGTAG 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTATGCGGTAG 728
Query 1176 TTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGA 1235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGCTCAGA 788
Query 1236 CCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAA 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5