BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATMG01200.1

Length=885
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942551 jgi|Araly1|942551|scaffold_603095.1                        374    8e-103
  Ahg952661 jgi|Araly1|952661|scaffold_900012.1                        132    5e-30 


> Ahg942551 jgi|Araly1|942551|scaffold_603095.1
Length=307

 Score =  374 bits (202),  Expect = 8e-103
 Identities = 214/220 (97%), Gaps = 0/220 (0%)
 Strand=Plus/Plus

Query  596  ATCTACAACGGATCCAGGAAATGGAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTG  655
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATCTGCAACGGATCCAGGAAATGCAACGTAACCTGGAGAACGAGAGGTCTCCCTACCGTG  60

Query  656  GGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCGCGAGCTGGAGGGAAAAGTGGCGC  715
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  61   GGCGGGAACTAGCCGCCCGCATCGATTGGGAGGTGCACAAGCTGGAGGGAAAAGTGGCGC  120

Query  716  GCAATCGCGCCTGGGATATGGTACGAGATGCTCAACTCGACATATGGAGGCAGGGGCTTG  775
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  GCAATCGCGCCTTGGATATGGTACGAGATGCTCAACTCAACATATGGAGGCAGGGGCTTG  180

Query  776  ATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCT  815
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATCAGGAATTAGTAAGGCAACAGGAGAATGAGTCCCGCCT  220


> Ahg952661 jgi|Araly1|952661|scaffold_900012.1
Length=2242

 Score =  132 bits (71),  Expect = 5e-30
 Identities = 75/77 (97%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  809  CCCGCCTCGAAGAAAGAAGGTTTCAGTCTCATTCAACCAACTCTCTTTTTGAAGCAGATA  868
            ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  275  CCCTCCTCGAAGAAAGAGGGTTTCAGTCTCATTCAACCAACTCTCTTTTTGAAGCAGATA  334

Query  869  GTTCACGAGATAATTGA  885
            |||||||||||||||||
Sbjct  335  GTTCACGAGATAATTGA  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32785708620


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5