| Annotation |
|---|
| Description | jgi|Araly1|477251|fgenesh2_kg.2__2381__AT1G80070.1 |
| Sequence |
ATGTGGAACA ACAACGATGG TATGCCCTTA GCTCCTCCTG GTACCGGCGG CTCCATGATG CCGCCACCGC CCGCTGCTCA TCCTTCTTAC ACGGCTCTTC CGCCGCCTTC TACTCCTACT CCTCCGCTCG AGCCTACTCC TGAGGAGGCG GAGGCCAAGC TTGAGGAGAA GGCCCGAAAA TGGATGCAGC TAAATTCCAA GCGGTACGGC GACAAGAGGA AGTTTGGATT CGTCGAAACT CAGAAGGAGG ACATGCCACC TGAGCACGTC AGGAAGATCA TCAGGCGAGT TTTCTCCTCT TCGATTTCGA ATTCCAGTTT ACTGGAATAT TATTTTCTGG CTAGGGATCA TGGTGATATG TCATCCAAGA AGTTCCGTCA CGACAAACGT GTATACCTTG GAGCCCTTAA ATTCGTTCCT CACGCAGTTT TCAAGCTCTT GGAGAATATG CCTATGCCCT GGGAGCAGGT CCGAGACGTG AAGGTTTTGT ACCACATCAC CGGAGCTATT ACATTTGTGA ACGAGATACC ATGGGTTGTG GAACCTATTT ACATGGCTCA GTGGGGTACT ATGTGGATTA TGATGCGAAG GGAGAAGAGG GATCGTCGTC ATTTCAAGAG AATGCGGTTT CCACCATTTG ATGATGAGGA GCCTCCACTA GACTATGCAG ACAACTTGCT GGACGTGGAT CCTCTAGAGC CAATTCAATT GGAGCTCGAT GAGGAAGAAG ATTCTGCTGT GTACACTTGG TTTTACGACC ACAAGCCACT CGTTAAAACA AAACTGATTA ATGGTCCCAG TTACCGGAGG TGGAACCTCT CACTTCCAAT TATGGCAACC CTTCACAGGC TTGCAGGCCA GTTGCTGTCT GATTTGATTG ATCGCAACTA CTTCTACTTG TTTGACATGC CATCTTTCTT CACAGCAAAG GCTCTGAACA TGTGCATACC TGGTGGACCT AAGTTTGAAC CTTTGTACCG CGATATGGAG AAAGGGGATG AGGACTGGAA TGAGTTTAAT GACATCAACA AGCTTATCAT TCGTTCCCCT CTGCGAACCG AGTACAGAAT AGCTTTTCCC CATCTCTACA ATAACCGGCC CAGGAAAGTA AAACTCTGTG TGTATCACAG TCCTATGGTT ATGTATATAA AGACCGAGGA TCCTGATCTT CCTGCATTTT ATTATGATCC GTTAATTCAC CCAATAAGCA ACACTAACAA GGAAAAGCGC GAAAGGAAGG TTTATGATGA TGACGATGAG GATGACTTCG CCTTACCAGA AGGAGTGGAA CCTTTGCTAA AAGATACCCA ACTCTACACT GACACTACAG CTGCTGGCAT ATCATTGTTG TTTGCCCCAC GACCTTTCAA TATGAGGTCT GGGAGGACTC GCCGGGCAGA AGATATTCCC TTGGTGTCAG AGTGGTTCAA GGAGCACTGT CCTCCTGCCT ATCCGGTTAA AGTTCGGGTC AGTTACCAAA AGTTATTGAA ATGCTACGTC CTGAATGAGT TGCACCATAG ACCACCTAAA GCTCAGAAGA AGAAGCACTT GTTTCGATCT CTTGCAGCTA CCAAGTTTTT CCAAAGTACC GAACTGGATT GGGTTGAAGT GGGTCTGCAA GTCTGTCGGC AGGGATATAA TATGCTGAAT CTGTTGATTC ATAGGAAGAA TTTAAACTAC CTGCATCTTG ACTACAACTT CAACCTCAAG CCTGTGAAAA CTTTGACCAC CAAAGAGCGA AAGAAGTCAC GTTTTGGGAA CGCTTTCCAT CTCTGCCGTG AGATCCTGCG GCTGACAAAA CTTGTAGTTG ATGCAAATGT CCAATTCCGA CTTGGTAATG TTGATGCCTT CCAATTGGCT GACGGTCTGC AATATATTTT CTCTCATGTT GGCCAGTTGA CGGGTATGTA TCGTTATAAA TACAGACTGA TGAGGCAGAT TAGGATGTGC AAGGATTTAA AGCACTTGAT ATATTATCGT TTCAATACTG GTCCTGTGGG TAAGGGTCCA GGGTGTGGAT TTTGGGCTCC AATGTGGAGG GTATGGTTGT TTTTCCTTCG GGGAATAGTT CCTCTTCTTG AGCGATGGTT AGGGAATCTT CTTGCACGTC AATTTGAGGG GCGTCATTCA AAAGGAGTGG CCAAAACAGT CACAAAGCAG AGAGTTGAAA GCCATTTTGA TTTGGAGCTT CGAGCTGCTG TCATGCATGA CGTCCTTGAT GCTATGCCAG AGGGTATCAA ACAAAATAAA GCGCGGACTA TATTGCAGCA CCTTAGTGAG GCATGGCGAT GCTGGAAAGC TAATATCCCA TGGAAGGTCC CTGGGTTACC TGTGCCAGTT GAGAATATGA TCCTCCGTTA TGTCAAGTCT AAGGCAGATT GGTGGACGAA TGTTGCTCAC TACAATCGTG AGCGTATCCG AAGAGGGGCT ACTGTTGATA AGACCGTTTG TAGAAAGAAT CTTGGAAGGT TGACTCGTCT TTGGCTAAAG GCAGAACAGG AACGACAGCA CAATTACCTG AAAGATGGTC CGTATGTCAC TCCGGAAGAA GCACTTGCAA TTTATACAAC TACTGTTCAT TGGCTGGAGT CAAGGAAGTT TTCTCCAATT CCATTTCCTC CATTGTCATA CAAACATGAC ACAAAGTTGC TCATCCTTGC CCTTGAGAGA CTGAAGGAAT CATATAGTGT AGCTGTGAGG TTGAACCAGC AGCAGCGAGA AGAGCTTGGT CTAATTGAAC AAGCTTATGA CAATCCTCAT GAAGCTCTAT CACGAATAAA ACGTCATCTT CTCACCCAAC GTGGCTTTAA AGAGGTTGGC ATAGAGTTTA TGGATCTATA TAGCTACTTG ATTCCAGTTT ATGAAATAGA GCCTCTAGAG AAAATTACCG ATGCATATCT TGATCAATAC TTGTGGTACG AAGGTGACAA GCGCCACTTG TTTCCAAACT GGATTAAGCC AGCAGACTCA GAGCCGCCCC CACTTCTGGT TTACAAGTGG TGTCAAGGTA TCAACAATTT GCAAGGCATA TGGGACACAG GTGATGGGCA GTGTGTGGTG ATGCTCCAAA CTAAGTTCGA AAAGTTCTTT GAGAAGATCG ATTTGACAAT GTTGAACAGG CTTCTTCGTT TGGTTCTTGA CCACAATATT GCAGACTATG TGTCTGCCAA GAATAACGTG GTCCTGTCTT ACAAGGATAT GAGTCATACT AACGCGTATG GTCTCATTAG GGGACTTCAG TTTGCATCGT TTGTTGTTCA ATTTTATGGA CTATTGCTTG ATCTTTTGCT TCTTGGTTTG ACTCGAGCGA GTGAAATTGC TGGGCCACCT CAGATGCCTA ACGAGTTTAT GACGTTTTGG GATACAAAAG TGGAGACACG CCATCCCATA AGACTCTATT CTCGGTATAT AGATAAAGTT CATATAATGT TTAAGTTTTC CCATGAAGAG GCTCGGGATC TTATTCAGCG ATATCTTACG GAGCATCCTG ATCCCAACAA TGAAAACATG GTGGGATACA ACAATAAGAA GTGCTGGCCA CGAGATGCAA GGATGAGGCT GATGAAACAT GATGTCAATC TTGGTAGAAG TGTCTTCTGG GACATGAAGA ACCGTCTTCC TCGGAGCATC ACTACTTTGG AGTGGGAGAA TGGCTTTGTC TCTGTCTATA GCAAGGATAA TCCTAACCTG CTCTTTAGCA TGTGTGGATT TGAAGTCCGC ATACTTCCAA AAATCAGAAT GACCCAAGAA GCTTTCAGCA ACACAAGAGA TGGTGTCTGG AATCTGCAAA ATGAACAGAC CAAGGAGAGG ACTGCAGTAG CTTTTCTGCG GGTTGACGAT GAACATATGA AGGTATTTGA GAATCGTGTG AGGCAGATCC TTATGTCATC AGGATCAACC ACCTTTACCA AGATCGTCAA CAAATGGAAT ACAGCTCTAA TTGGTCTCAT GACTTACTTC CGGGAAGCCA CTGTACACAC ACAAGAGCTC TTGGATCTAC TGGTCAAGTG TGAGAATAAA ATCCAAACAA GGATTAAGAT TGGGCTGAAC TCAAAGATGC CTAGTCGATT TCCTCCTGTT ATCTTCTACA CTCCAAAGGA AATTGGTGGG CTGGGAATGT TGTCAATGGG TCATATTTTG ATCCCACAAA GTGACCTTCG GTACAGCAAA CAAACAGATG TTGGTGTAAC CCACTTTAGG AGTGGAATGA GCCACGAGGA AGATCAGCTT ATACCAAATC TTTACCGTTA CATACAGCCG TGGGAAAGTG AGTTTATTGA TTCACAGCGG GTGTGGGCAG AATATGCGTT AAAGAGGCAG GAAGCCCAGG CCCAAAATAG GCGTCTTACA CTGGAAGATT TGGAAGATTC TTGGGATAGG GGAATTCCTC GCATAAATAC ACTGTTTCAG AAGGATAGGC ACACATTGGC ATATGATAAA GGTTGGAGGG TTCGGACCGA CTTCAAGCAG TACCAAGTCC TTAAACAAAA TCCGTTCTGG TGGACACACC AGAGGCATGA TGGGAAGTTG TGGAACTTGA ACAATTACCG CACTGATGTC ATCCAAGCTC TTGGAGGTGT TGAGGGTATT CTTGAGCACA CGTTATTCAA GGGGACCTAT TTCCCGACAT GGGAGGGACT TTTCTGGGAG AAGGCATCTG GTTTTGAGGA GTCGATGAAA TATAAGAAGT TGACTAATGC GCAGAGGTCT GGTCTGAACC AGATTCCAAA TAGAAGATTC ACGCTTTGGT GGTCGCCAAC AATTAATCGA GCAAATGTCT ATGTGGGTTT CCAAGTGCAG TTGGATCTGA CAGGAATATT TATGCATGGA AAGATTCCTA CACTGAAGAT ATCTTTGATT CAGATTTTCC GTGCCCATTT GTGGCAGAAG ATCCATGAGA GTGTTGTTAT GGATCTTTGC CAAGTATTGG ACCAAGAGTT GGACGCTTTG GAGATAGAAA CTGTGCAGAA GGAGACAATT CATCCAAGGA AGAGTTATAA GATGAACAGC TCTTGTGCTG ATGTTCTTCT ATTTGCTGCT CATAAATGGC CAATGTCTAA GCCTAGCCTG GTTGCAGAGT CAAAGGATAT GTTTGACCAG AAAGCGAGTA ATAAGTATTG GATAGATGTG CAACTTCGAT GGGGAGATTA TGACTCCCAT GATATTGAGC GTTATACTAG GGCCAAATTC ATGGACTATA CAACTGACAA CATGTCTATC TATCCATCTC CAACAGGTGT AATGATTGGG CTTGATCTGG CATACAACCT GCATTCTGCC TTTGGTAATT GGTTCCCTGG TTCAAAACCT CTTCTTGCTC AAGCAATGAA CAAGATCATG AAGTCCAATC CGGCCCTATA TGTGTTGAGA GAGAGGATAA GGAAGGGTCT GCAGTTATAC TCTTCTGAGC CTACAGAGCC ATATTTGTCA TCTCAAAACT ATGGTGAAAT ATTCAGCAAT CAAATTATAT GGTTTGTTGA TGATACCAAT GTCTATCGTG TCACGATTCA CAAGACATTT GAAGGAAATT TAACGACAAA GCCAATCAAT GGTGCGATTT TCATTTTCAA TCCAAGAACT GGGCAGCTGT TCCTGAAGGT TATCCATACA AGTGTTTGGG CTGGTCAGAA ACGTCTTGGC CAGCTAGCGA AATGGAAAAC TGCTGAAGAG GTTGCTGCAC TTGTGCGATC TCTCCCTGTT GAAGAACAGC CGAAACAGAT TATTGTCACG CGGAAAGGAA TGTTGGATCC CCTTGAGGTT CACTTGCTGG ATTTCCCCAA CATTGTTATC AAGGGAAGCG AGCTGCAGCT TCCGTTCCAG GCTTGCCTCA AGATAGAGAA ATTTGGTGAC CTGATTTTGA AGGCCACAGA ACCGCAGATG GTCTTGTTTA ATATATATGA TGATTGGTTG AAGAGTATTT CTTCGTATAC TGCCTTTTCA AGACTTATTT TGATCCTTCG TGCGCTTCAC GTGAATAATG AGAAGGCTAA GATGTTGTTG AAGCCTGACA AGTCCGTTGT CACTGAGCCA CATCACATCT GGCCTTCTCT CACTGACGAT CAATGGATGA AGGTGGAGGT AGCACTTCGA GATCTTATCC TTTCTGACTA CGCAAAGAAG AACAATGTGA ATACCTCAGC TCTGACACAA TCAGAGATCA GAGATATTAT TCTTGGAGCT GAGATTACTC CACCCTCTCA ACAGAGGCAA CAGATAGCTG AGATTGAGAA ACAGGCAAAG GAAGCCAGCC AGCTTACTGC AGTCACAACA AGAACTACAA ATGTCCATGG TGATGAGCTC ATTGTCACCA CCACGAGCCC TTACGAGCAA TCTGCATTCG GTTCCAAAAC AGATTGGCGT GTACGTGCAA TATCAGCTAC TAATCTTTAC CTCAGAGTCA ATCACATATA TGTGAACTCA GATGACATAA AGGAAACCGG ATACACCTAC ATCATGCCAA AGAACATTTT GAAGAAGTTT ATATGCGTAG CAGATCTTCG TACTCAAATT GCTGGATATT TATATGGTAT TAGTCCCCCG GATAATCCCC AAGTGAAGGA GATCCGTTGT GTTGTGATGG TGCCACAGTG GGGCAGTCAT CAGCAAGTTC ACCTGCCGTC ATCTCTTCCT GAGCATGATT TCCTAAATGA TCTTGAGCCC TTGGGATGGT TGCACACACA GCCTAACGAG CTGCCTCAGC TGTCACCACA TGATGTAACC TCTCATTCCC GTGTTTTGGA GAACAACAAG CAATGGGATG GAGAAAAATG CATCATCCTG ACCTGCAGTT TCACTCCGGG CTCCTGCTCT TTGACGTCAT ATAAGTTGAC CCAAACCGGA TATGAATGGG GGCGGCTTAA CAAGGACACA GGCAGCAATC CTCACGGTTA CCTTCCCACC CATTATGAAA AGGTTCAGAT GCTGCTGAGT GACCGGTTCC TCGGGTTTTA CATGGTTCCT GAGAATGGAC CGTGGAACTA CAACTTCATG GGAGTGAAGC ACACGGTGAG TATGAACTAC AGTGTCAAAC TCGGATCCCC AAAGGAGTAC TATCACGAGG AGCATCGACC CACTCATTTC CTAGAGTTCA GCAACATGGA GGAGGCTGAC ATTGCAGAGG GAGATCGCGA GGACACATTT ACTTGAGATA TACTTACTTT TCTTACCATG TGT |
| Length | 7173 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 18082636.. 18092249 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G80070.1 |
| Description | Pre-mRNA-processing-splicing factor |
| TAIR curator summary | a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. |
| Alias | [EMB14][EMB177][EMB33][SUS2][EMBRYO DEFECTIVE 14][EMBRYO DEFECTIVE 177][EMBRYO DEFECTIVE 33][ABNORMAL SUSPENSOR 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg903021 | auxin transport protein (BIG) |
| 1.41421 |
Ahg473977 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
| 2 |
Ahg470642 | Ribosomal protein S5/Elongation factor G/III/V family protein |
| 3 |
Ahg474857 | Translation elongation factor EF1B, gamma chain |
| 3.87298 |
Ahg473063 | HAESA-like 1 |
| 3.87298 |
Ahg939446 | transducin family protein / WD-40 repeat family protein |
| 4.69042 |
Ahg482367 | SecY protein transport family protein |
| 5.09902 |
Ahg477585 | DegP protease 7 |
| 6.08276 |
Ahg951429 | nitrogen fixation S (NIFS)-like 1 |
| 6.16441 |
Ahg496619 | ortholog of human splicing factor SC35 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|