Annotation |
Description | jgi|Araly1|490642|fgenesh2_kg.7__75__AT4G38780.1 |
Sequence |
ATGTGGACCA ATGATGGTAC GCCTTTAGCT CCTCCTGGCA CCTACAGTTC GAGGATGCAG ACACCAACAC AGCCCGCTGA TCACCCTTCT TACACGTCGC CTTCTAATCG GAATCCTCCG ACGGAACCTA CTTCTGAGGA TGCAGAGGCG AAGCTTGAGA AGAAGGCCAG AACATGGATG CAGCTAAATT CCAAACGGGA TCATGGTGAT ATGTCATCTA AGAAACATGG ACTTGACAAA CGTGTATATC TTGGAGCACT TAAGTTCGTT CCTCACGCAG TTTTCAAGCT CCTGGAGAAT ATGCCTATGC CCTGGGAACA GGTACTCATG CTCAAAATTT TGAACTCAGA TGTCTTCCAG GTCCGGTACG TGAACGTGGT ACCATGGGTT GTGGAACCTA TTTACATGGC TCAGTGGGGT TCTATGTGGA TAATGATGAG AAGAGAGAAG AGGGATCGTC GTCATTTCAA GAGAATGCGG TTTCCACCAT TTGATGATGA GGAGCCCCCT CTAGACTATG CTGATAACCT GCTGGACGTG GATCCTCTTG AGCCAATTCA GTTGGAGCTA GACGAGGAAG ATGATTCTGC TCTATACTCT TGGTTTTACG ACCACAAGCC ACTTGTAAAA ACAAAACTGA TCAATAGTCC AAGTTACCAG ACGTGGAATC TCTCACTTCC AATTATGTCA ACCCTTCACA GGCTTGCAGC CCAGTTGTTG TCTGATTTGG TTGATCGCAA CTACTTCTAC TTGTTTGACA TGCCATCATT CTTCACAGCA AAGGCACTGA ACATGTGCAT ACCAGGCGGT CCTAAGTTTG AGCCTTTGTA TCGTGATATG GAGAAAGGAG ATGAGGACTG GAATGAATTT AATGACATCA ACAAGCTTAT CATTCGATCC CCTCTGCGAA CTGAGTACCG AGTAGCTTTC CCCCATCTGT ACAATAATAG GCCCAGGAAA GTAAAACTCT GTGTCTATCA CACTCCTATG ATTATGTACA TAAAGACAGA GGATCCTGAT CTTCCTGCGT TTTATTATGA TCCATTAATT CACCCAATAA GTAACTCGAG TAACACTAAT AAGGAACATC GCAAAAGTAA TGGTTATGAT GATGATGAGG ATGACTTTGT GTTACCAGAA GGAGTGCAAC CTTTGCTGAA TAACTCCCCA CTCTACACTG AAACTACAGC TGCTGGCATT TCATTTTTGT TTGCCCCTCG GCCTTTCAAT ATGAGGTCTG GGAGGACTCG GCGGGCAGAA GATATACCCC TTGTTGCAGA ATGGTTTAAG GAGCACTGTC CTCCAGCATA TCCTGTCAAA GTTCGGGTTA GTTACCAGAA GCTTTTGAAG TGTTATGTAC TCAATGAGCT GCACCATAGA CCACCTAAGT CTCAGAAGAA GAAGCACTTG TTCCGATCTC TTGCAGCTAC AAAGTTTTTC CAGAGCACCG AACTGGATTG GGTTGAAGTG GGTCTGCAAG TCTGCCGGCA GGGATATAAT ATGCTGAACC TGTTGATTCA CAGGAAGAAT TTGAACTACC TGCACCTTGA TTATAACTTC AACCTGAAGC CTGTGAAAAC TCTGACAACC AAGGAACGAA AGAAGTCACG TTTTGGAAAC GCTTTCCATC TCTGCCGTGA GATCCTCCGG GTGACAAAGC TTGTAGTTGA TGCAAATGTC CAGTTCCGAC TTGGTAATGT TGATGCCTTT CAATTGGCTG ATGGCCTGCA ATATATTTTT TCCCATGTTG GGCAATTGAC AGGTATGTAT CGTTATAAGT ACAGGCTTAT GAGACAAATC AGGATGTGCA AGGATTTGAA ACACTTGATC TATTACCGTT TCAATACTGG TCCTGTGGGT AAAGGACCAG GGTGTGGATT TTGGGCTCCA ATGTGGAGGG TATGGTTGTT TTTCCTTCGC GGAATAGTTC CTCTTCTAGA ACGATGGTTA GGGAACCTGC TTGCACGTCA ATTTGAGGGG CGTCACTCAA AGGGAGTGGC CAAAACAGTC ACAAAACAGA GAGCTGAAAG CCATTTTGAT TTGGAGCTTC GAGCTTCTGT CATGCATGAT GTCGTTGATG CAATGCCAGA GGGTATCAAT CAAAATAAAG CGCGGACGAT ATTGCAGCAC CTTAGTGAGG CATGGCGGTG TTGGAAAGCT AATATACCAT GGAAGGTCCC TGGATTACCT GTGGCAATTG AGAATATGAT CCTCCGATAT GTCAAGTCTA AAGCTGATTG GTGGACAAAT GTTGCTCACT ACAATCGTGA GCGTATCAGA AGAGGGGCTA CTGTTGATAA GACAGTTTGT AGAAAGAATC TTGGACGGTT GACCCGTCTT TGGCTCAAGG CAGAACAGGA ACGACAACAT AATTTTCAGA AAGATGGTCC ATATGTCACT GCGGATGAAG GAATAGCAAT TTATAGCACC ACTGTAAATT GGCTGGAATC TAGAAAATTT TCACCAATCC CATTTCCTCC ATTGTCGTAT AAACATGACA CAAAGTTGCT GATCCTGGCC CTTGAGAGAC TTAAAGAATC ATATAGTGCA GCTGTGAGGT TGAATCAGCA GCAGAGAGAA GAGCTTGGTT TAATTGAACA AGCTTATGAC AATCCTCACG AAGCTTTGAT GCGAATAAAG CGTCATCTTC TCACTCAGCA TAGCTTCAAA GAAGTTGGCA TAGAGTTTAT GGATCTATAT AGCCATTTGA TTCCCGTCTA TCAAATTGAT CCCCTGGAGA AAATTACTGA TGCTTATCTT GATCAATATT TGTGGTATGA GGGTGACAAG CGCCACTTGT TTCCCAACTC GATTAAGCCT GCAGACTCAG AGCCGCCACC GCTTCTGGTT TACAAATGGT GTCAAGGTAT CAATAATTTG CAAGGCATAT GGGACACAAG TGATAGTCAG TGTGTGGTGA TGCTCCAGAC GAAGTTTGAA AAACTCTTTG AGAAGATTGA TTTTACAGTG TTGAACAGCC TTCTTCGTTT GGTTCTTGAT CATAAGCTTG CCAACTATGT GTCTGGCAAG AATAATGTGG TTCTGTCTTA CAAGGATATG AGCTATACTA ATACATATGG ACTCATTAGG GGACTGCAGT TTGCATCGTT TGTTGTTCAG TTTTATGGAC TAGTGCTAGA TCTTTTGCTC CTTGGTTTGA CTCGAGCGAG TGAAATTGCC GGGCCACCGC AGAGGCCTAA TGAGTTTATG ACCTATTGGG ATACAAAAGT TGAGACTCGC CATCCCATAA GACTGTATTC TCGGTATATA GACAAAGTGC ATATAATGTT CAAATTTACC CATGAAGAGG CTCGGGATCT TATTCAACGT CATCTCACCG AGCGTCCTGA TCCTAATAAT GAAAACATGG TGGGATATAA CAATAAAAAG TGCTGGCCAA GAGATGCAAG GATGAGGTTA ATGAAACATG ATGTCAATCT TGGTAGAAGT GTCTTCTGGG ATATGAAAAA TCGTCTTCCT CGAAGCATCA CAACCTTGGA GTGGGAGAAT GGCTTCGTCT CCGTGTACAG CAAGGATAAT CCAAACTTGC TTTTCAGCAT GTGTGGATTT GAAGTCCGCA TGCTTCCAAA AATTAGGATG GGCCAAGAAG CTTTCAGCAG CACAAGGGAT GGTGTCTGGA ATCTGCAGAA TGAACAAACT AAAGAGAGGA CTGCAGTTGC TTTTCTGCGG GTTGATGATG AACACATGAA GGTGTTTGAG AATCGTGTGA GGCAGATTCT TATGTCGTCA GGGTCAACAA CATTTACCAA AATCGTCAAT AAATGGAATA CAGCTCTGAT AGGTCTCATG ACTTACTTCC GTGAAGCCAC TGTGCACACG CAAGAGCTCT TGGATCTGCT TGTTAAATGT GAAAATAAAA TCCAAACGAG GGTTAAGATT GGACTGAACT CAAAGATGCC TAGTCGATTT CCTCCTGTTA TCTTCTACAC TCCAAAGGAA ATTGGCGGGC TTGGAATGTT GTCGATGGGT CATATTTTGA TCCCACAAAG TGACCTTCGG TACAGCAAAC AAACAGATGT TGGTGTAAGC CATTTCAGGA GTGGAATGAG CCACGAGGAA GATCAACTGA TTCCTAATCT TTACCGTTAC ATACAACCAT GGGAAAGCGA ATTTATTGAT TCACAGCTGG TGTGGGCAGA ATATGCTTTA AAGAGGCTGG AAGCACAGGC CCATAATAGA CGTCTGACGT TGGAGGATCT CGAAGACTCT TGGGATAGGG GAATTCCGCG TATAAATACG CTGTTCCAGA AGGATAGGCA CACTTTAGCA TATGATAAAG GTTGGAGGGT CCGGACAGAC TTCAAACAGT ACCAATCCCT GAAACAAAAT CCTTTCTGGT GGACACACCA GAGGCATGAT GGTAAATTGT GGAACTTGAA TAATTACCGA ACTGATGTCA TCCAAGCTCT TGGAGGTGTT GAGGGTATTC TTGAGCACAC CTTATTTAAA GGAACATACT TTCCAGCGTG GGAGGGTCTT TTTTGGGAGA AGGCATCTGG TTTTGAGGAG TCTATGAAAT ATAAGAAGCT GACAAATGCG CAGAGGTCTG GTCTGAACCA GATTCCGAAT AGAAGATTCA CGCTTTGGTG GTCGCCAACA ATTAATCGAG CGAATGTATA TGTGGGTTTT CAAGTGCAGT TGGATTTGAC AGGAATATTT ATGCACGGAA AGATTCCTAC TCTTAAAATA TCTTTGATTC AGATTTTCCG TGCCCATTTG TGGCAAAAGA TCCATGAGAG TGTTGTTATG GACCTTTGCC AAGTACTGGA TCAAGAGTTG GATCCGTTGG AGATAGAAAC TGTGCAGAAA GAGACAATTC ATCCACGGAA GAGTTACAAA ATGAATAGCT CTTGTGCTGA TGTTCTTCTT TTTGCTGCCT ATAAATGGCC AATGTCTAAG CCTAGTCTAG TGGCTGAGTC AAAGGATATG TTTGATCAGA AAGCAAGTAA CAAGTATTGG ATAAATGTGC AACTTCGATG GGGAGATTAC GACTCCCATG ATATTGAACG CTATACTAGG GCCAAATTCA TGGATTACAC AACGGACAAC ATGTCTATCT ATCCATCTCC AACGGGTGTA ATTATTGGGC TTGATTTGGC CTATAACTTG CATTCTGCCT TTGGTAATTG GTTCCCTGGT TCAAAAACTC TGCTTGCTCA AGCTATGAAC AAGATCATGA AGTCCAATCC CGCTCTATAC GTGTTGAGAG AGAGGATAAG GAAAGGTTTG CAGCTGTACT CATCTGAGCC TACAGAGCCA TATTTGTCAT CTCAAAACTA TGGTGAAATA TTCAGCAATC AAATCATATG GTTCGTTGAT GATACCAATG TATACCGTGT CACAATCCAC AAGACATTTG AAGGAAATCT AACAACAAAG CCAATCAATG GTGTAATTTT TATTTTCAAC CCAAGAACAG GGCAACTATT CCTAAAGGTC ATTCATACAA GTGTTTGGGC TGGGCAGAAG CGCCTTGGTC AGCTAGCGAA ATGGAAAACT GCTGAAGAGG TTGCGGCACT TGTGCGGTCT CTCCCTGTTG AAGAACAACC AAAACAAGTT ATTGTGACTC GTAAAGGAAT GTTGGATCCC CTTGAGGTTC ATCTGTTGGA TTTCCCAAAC ATTGTTATAA AGGGAAGTGA ACTCCAGCTT CCGTTCCAGG CTTGTCTTAA GATAGAAAAA TTTGGTGATC TGATTTTGAA GGCCACAGAG CCACAGATGG TCCTCTTCAA TATCTATGAT GATTGGTTGA TGACTGTTTC TTCGTACACT GCCTTTCAAA GACTCATTCT GATCCTTCGC GCTCTTCACG TAAACAATGA GAAGGCAAAG ATGTTATTGA AGCCTGACAT GTCTGTTGTC ACTGAGCCAA ATCACATCTG GCCCTCTCTC ACTGACGACC AATGGATGAA GGTGGAGGTT GCTCTTAGAG ATCTCATCCT TTCTGACTAC GCGAAGAAAA ACAACGTGAA TACGTCAGCT CTGACACAGT CAGAGATCAG AGATATAATA CTTGGAGCGG AGATTACTCC TCCGTCTCAG CAGAGGCAAC AGATAGCTGA GATTGAGAAA CAGTCAAAGC AAGCGAGCCA GCTTACTGCA GTCACAACAA GAACCACAAA TGTTCATGGT GATGAATTGA TTAGCACCAC CATTAGTCCG TACGAGCAAT CTGCATTTGG ATCCAAAACA GACTGGCGTG TGCGTGCAAT TTCAGCTACT AACCTCTACC TCAGGGTCAA CCACATCTAC GTGAACTCGG ACGACATAAA GGAAACTGGA TACACCTACG TTATGCCCAA GAACATATTG AAGAAGTTCA TATGCATAGC GGATCTTCGA ACTCAAATTG CTGGATATTT ATATGGGATA AGTCCGCCGG ATAATCCTCA AGTGAAGGAA ATCCGTTGTG TTGTGATGGT GCCGCAATGG GGAAATCACC AGCAAGTTCA ACTGCCGTCG TCTCTTCCGG AACATCAGTT CTTGGATGAT TTAGAGCCCC TGGGATGGAT GCACACACAG CCTAACGAGC TTCCTCAGTT GTCACCACAG GATGTGACTT TTCACTCCCG TGTTCTGGAG AATAACAAGC AATGGGACAG AGAAAAATGC ATCATCCTGA CATGTAGTTT CACTCCGGGC TCATGCTCTT TGACGTCATA TAAGCTGACG CAAGCCGGAT ATGAATGGGG ACGGCTGAAC AAAGACGCAG GCAGCAATCC CCACGGTTAC CTTCCCACCC ACTATGAGAA GGTTCAGATG CTCTTGAGTG ACCGTTTCTT CGGGTTCTAC ATGGTTCCTG ATAACGGACC CTGGAACTAC AACTTCATGG GAGTTAATCA CACGGTGGGC ATGAACTATA GCTTGAAACT TGGAACCCCC AAGGAGTACT ATCACCAAGA CCATCGACCC ACTCATTTCC TCGAGTTCAG CAATATGGAG GAGGATGGTG ACCTTGATCG TGAGGACACT TTTGCTTAAG ACGTTTTTTG GATGTATGAT GTAAATTAAG TTTGCAAATT GTTAATGATG AGATTGAAAA GATTTTTCTC TATTTTAAAA AATAATAGAC TTCACAAGCA AATTCACTTA CATGATTAAA AAAAAAAAAA AAAAAAAGAC TTGAATAACC T |
Length | 7151 |
Protein Sequence | |
Protein Residue | |
Map Location | scaffold_7: 222001.. 231798 |
Download Sequence |
|
A.thaliana |
AGI-code | AT4G38780.1 |
Description | Pre-mRNA-processing-splicing factor |
TAIR curator summary | |
Alias | |
Gene coexpression |
MR |
MR | Locus | Description |
18.2483 |
Ahg494005 | Ribosomal protein S4 |
51.3809 |
Ahg924762 | RING/U-box superfamily protein |
65.8179 |
Ahg482040 | Plant protein of unknown function (DUF828) |
84.0179 |
Ahg478844 | phosphatidylinositol-4-phosphate 5-kinase family protein |
84.3801 |
Ahg490500 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
90.8955 |
Ahg479760 | |
|
RNA-seq |
Seasonal expression (July 2011 to June 2013) |
|
The four seasons |
|
Growth Chamber expression |
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