Detail



ID : Ahg907021

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|907021|Al_scaffold_0002_102
Sequence
ATGGCTTCTT CTTCTTCTTC TTCTTCGCTT CGCAACTGGA CATACCACGT CTTCGCGAGC TTTCATGGAG AAGACGTCCG TAAAACATTT CTGAGTCATA TACGCAAACA GTTTATCTGC AATGGGATCA CGATGTTCGA TGATCAAGGG ATCAAGAGAG GCAAAACCAT TACCCCTGAA CTCATACAAG GGATTAGAGA ATCGAGGATC TCGATCATCG TACTCTCAAA AAATTATGCT TCTTCCAGCT GGTGTTTGGA TGAGCTACTG GAGATATTGA AGTGCAGGGA AGATATTGGA CAAATAGTGA TGACAGTCTT CTACGGAGTA GATACATCTG ATGTGCGGAA ACAAACCGGA GAATTTGGGA TTGCTTTCAA CAAAACTTGT GCTGGTAAAA CGGAGGAGGA GAGCAGAAGA TGGAGCCAAG CTTTGACCGA TGCTGCCAAC ATAGCAGGAG TAGACTTCAA AAACTGCAAA AATGAGGCGG AAATGATTGA GGAGATTGCA AACCATGTTT CTAACCAACT GAATGTGACA CCGTCTAAGG ATTTTGATGG CATGGTAGGA CTAGAGGCTC ATTTGAGAGA AATGGAGTCT TTGCTAGATT TAGATTCAGT TGGAGTTCAA ATGGTTGGAA TCTACGGTCC TGCGGGCATT GGTAAGAGTA CCATTGCTAG AGCTCTACAT AGTCGACTTT CTAATAGGTT TCAACATAAT TGTTTTGTGG ACATCCAATG GGAAAGCTTC CGCATTGGTT TTGATGATTA TGGTTTGAAG CTGCGTTTAC AAGAAAAATT TCTTTCAAAT ATTTTGGACC TAAGTGGACT GAGGATAAGC CATTTAGGTG CCATAAAAGA ACGGCTATCC AAGCTGAGGG TGCTTATCAT TCTTGATGAT GTGAACCATA TGAAGCAACT AGAGGCGTTG GCAAATGAAA CTACGTGGTT TGGTCCTGGA AGTAGGATTA TTGTGACAAC AGAAAACAAA GAGCTTCTGC ATCAACATGG TATCAACAAT ACGTACCATG TGGGGTTTCC ATCTGATGAA AAAGCGCTCA AGATCTTATG TCGATATGCT TTCAGGAAAA GCTATCCACA TAATGGTTTT AAAAAGCTTG CATTAAGAGT AACAGAGCTT TGTGGCAACC TTCCATTGGC TCTCCGTGTG GTTGGTTCAT CATTACGTGG GAAGAATGAG GAGGAGTGGG AAGAAGTAAT ATGCAGGCTA GACAGTATTT TTGATCATCA AGATATCAAG GAAGTACTAA GAGTTGGTTA TGAGAGTTTA CATGAGAATG AGCAATCTCT ATTTCTCCAC ATTTCAGTCT TCTTCAACTA TCGAGATGGT GATCTTGTGA CAGCCATGTT GGCTGACAAG AACTTGGATG TCAAATATGG GTTGAAAATC CTAGGTACTA GAGAAGTGTC TGGCATATCA TTTGATACAT CAGGAATCAA CGAAGTCATT ATAAAAAAGG GAGCTTTTAA AAGAATGCCC AATCTTCGGT TCCTCACAGT CTACAAAAGT AAAGATGATG GAAATGATGT AGTGTATATA CCAGAGGAGA TGGAGTTTCC ACGTTTTCTA AGGTTATTAG ATTGGGAGGC ATACCCAAGC AAGAGTCTTC CTGCTAACTT TAATGCAGAA TCTCTTGTCG AACTCATATT GTCAGATAAC CAGCTCGAGA AGCTTTGGGA AGGATCTCAG CACCTTCCAA ATCTCAAGAA GATGGATTTG AGTCATTCCT ATGATCTAAA GCAACTCCCA GACCTTTCAA ATGCTACAAA TCTCGAGAGC TTGGATGTGC ATCTTTGCGC GAGTTTGGTA GAGTTTCCTT CCTATATTGG AAATCTTCAT AAACTAGAAA AGTTGAAAAT GGGTTTCTGT ATAAATCTAC AAGTTGTTCC GACTCTCGTC AACTTGGCAT CGCTTGATTA TCTCGACATG AAGGGATGCT CACAGTTGAA AAAATTTCCA GATATTTCCA CGAATATCAG AGCACTCGTA ATCGCAGACA CAATATTAGA AGAATTGCCT AGATCGATTA GGCTTTGGTC TCGGCTTCAG TATCTCAGTA TATACGGCAG TGTCAAAGAT CCACTTCTCG GTCGCGCAGA TATTGAGAAA GTTCCAGATT GGATCAAAGA TCTTCCTAGA TTACAATCTC TTCAGATATT TGGCTGTCCA AAACTTGCAT CACTGCCAGA GATCCCTAGC TCACTGAAAA CACTAATAGC AAACACTTGT GAATCATTGG AGACCCTTGC ATCTTTCCCT ATTGACTCTC AAGTTACTAG TCTTTTTTTC CCCAACTGCT TCAAATTGGG TCAAGAAGCA CGACAAGTAA TTACTCAGCA ATCATTGTTG GCATGCCTAC CCGGAAGAAC AATACCTGCG GAGTTCCATC ATCGAGATAT AGGAAATTCC TTGACATTCC GCCCAGGTTT CTTTGGATTT AGGATTTGTG TCGTGGTTTC GCCTAAACCA GCGATGGGAG AACATATTCG TCATTACTCA ATGTCTCGCA TATGCATAAA TGGTTGCCCC ACTGATCAAC ACATACTTAC GGGTCTCCGT GAGATCCGAG GGGAACATCT ATGTATAACT CAATTTGATT TGTCTGACGA AGATCCGGAG AAAGAGATAT TGTTGGAAAT CATCACCACA TACCAGGAAG TCGACATTAT TGAATGTGGT GTCCAGATCT TGACGGTTGA AACCGACAGA GCAATAAGAA GCTATGAATC TATATCAGAA CAAGTGTCTG CAGACGACGT TGAGAATATC TCTGGTGGGA GCAATGAGTT TGATGAACTC AGAGTATAA 
Length2829
Protein Sequence
Protein Residue
Map Locationscaffold_2: 546288.. 549814
Download Sequence
A.thaliana
AGI-codeAT1G64070.1
DescriptionDisease resistance protein (TIR-NBS-LRR class) family
TAIR curator summaryEncodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.
Alias[RLM1][RESISTANCE TO LEPTOSPHAERIA MACULANS 1]
Gene coexpression
MR
MR Locus Description
25.5147 Ahg483104 LOB domain-containing protein 15
49.6588 Ahg921560 FBD, F-box and Leucine Rich Repeat domains containing protein
52.5071 Ahg945592
57.7235 Ahg327926 Galactose oxidase/kelch repeat superfamily protein
68.7605 Ahg323966
76.9545 Ahg943128
77.0714 Ahg919963
85.0294 Ahg351609 Protein of Unknown Function (DUF239)
89.2693 Ahg899929 Bromo-adjacent homology (BAH) domain-containing protein
90.4655 Ahg945462
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression