Detail


ID : Ahg915006

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|915006|Al_scaffold_0001_5260
Sequence
ATGGCTTTTT CTTCTTCTTC TTCTTCTGCT CTTTCGATTC CTTTATCTTC TTCGTCTCAA AACTGGGAGT ACGATGTCTT TCCCAGCTTC CACGGGAAAG ATGTACGCAA AACCTTTCTC AGCCACCAAC TGAAGGAGTT CGGAAGAAAA GCAATCAACT TTTTTGTTGA TAACGAGATC AAGAGAGGAG AATTCATCGG TCCTGAACTC AAACGGGCAA TCAAAGGATC TAAGATTGCT GTTGTCTTGC TCTCCAAGAA TTACGCTTCT TCTTCGTGGT GTCTTGACGA ATTGGTGGAG ATAATGAAGA AAGAGTCGGG TCAAACGGTG ATCACCATTT TCTATGAAGT AGATCCAACA GATGTAAAAA AGCAGAAGGG AGACTTTGGG AAGGTCTTCA AAAAAACTTG CAAAGGTAAA GGCAAGGAGA AGGTTCAGAC ATGGAAGGAA GCTTTGGAGG GTGTGGCCAC AATCGCGGGT TACCATTCAA GCAACTGGGT TGATGAATCA ACCATGATTG AAAACATCGC TGCTGAAATT TCGAACAAGC TCAATCATTT GACGCCGTCA CGTGATTTTG ACGATTTAAT TGGGATGGGA GCTCATATGA AAAGGATGGA ACAGTATTTA CGTCTAGATT TGGATGAAGT GAGGATGATT GGGATTTGGG GTCCGCCAGG GATTGGAAAG ACCACCATAG TCAGGTTTAT GTTTAACCAA CTCTCCAACA ATTTCCAAAA TAGCGCATTC ATGGTGAGTA TCAAAGGAAG CTATCCAAGA CCTTGTCTTG ATGAGTACAC TGCACAATTG CGACTACAGA AAGAAATGTT GTGTGAGATG TTCAATCAGA AAGATATCAT GATTTCTCAT TTAGGAGTCG TACAAGGACG GTTGGGAGAC AGGAAAGTGA TTCTTGTTCT TGATGATGTG GATCGGTTAG CACAACTAAA TGCCTTGGCC AAAAATGTTC ATTGGTTTGG TCGTGGAAGT CGGATTATCA TCACAACAGA AGATCTAAGA CTTTTGAAGG CACATGGGAT CGACCATATA TACAAGGTGA ATTTTCCATC AAATGATGAG TCTCTTCAAA TGTTCTGCAT GTATGCTTTT GATCAAAAGT CCCCTAAAGA TGGTTTCGAT GGACTTGCTC GTGAAATTAC ATACCTTGTC GGTGAACTTC CTTTAGGACT GAAGGTTATG GGATCCTACT TTCGAGGATT ATCCAAGGAG CGGTGGTCAA TGGAAGTATC AAGGTTAAGG ACTAACCTTA ATGGAGAAAT TGAGAGCATT TTGAAGTTCA GTTATGATGC TTTATGTGAT GAAGATAAAG ATTTATTCCT TCATATAGCT TGCTTTTTCA ATGGGGAAAA AATGAGGAGA GTGAAAGAAT TTCTTGCTGA AAAATTCAAG GATTTGAGTC AAAGGCTTGA CGTTTTAGTT GAGAAATCTC TCATATCTAT TGAATATAAT CAATATGATT ATCAACGCAA ACATGATTCG TATGTAACGA TGCATAAATT GTTGGGCCAA CTAGGTAGAA AAATCGCCAG TAACTCTGAT CTTGAGCCTA GGCAACGCCA GTTTTTGATT GAAACTGATA TTTCTGCTTT ACTCCCTGGT TATACAGCGA TTACTAGAAG TTTTATTGGC ATAGAATCCA AGTATGGGTT AAATATAACT GGGGAAATCT TTGAAGGAAT GTCTAATCTC CAGTTCTTAA GAATCAGCAA TGATCATGGT CATCGAAACA TTATATCTTC TCAGAGATGT TTGACCTTTA TATCTCCAAA TCTACGATTA CTATATTGGT CTTTTTGTCC AATGACATGT TTGAGTTTTA CAAATGACCT AGAGTTCCTT GTTGAATTAA AAATGTTTTG CAGCACGCTT GAGAAGCTCT GGGACGGAAC TAAACTGCTT CGAAATCTCA AGCGGATAGA TTTGTCATCG TCTCGTTACC TGAAGGAGCT TCCTAATCTC TCAATGGCCA CTAATCTCAC ATCCTTAGAT GTTCGTGGAT GTTCAAGTCT AGTGGAGCTC CCTTCTTCTA TTGGGAATGC AACTAATCTC GAAGGTTTAT TTCTCAATGG ATGTTCAAGT TTGGTGGAAC TTCATTGCTG CCCCATTCCT TTTGCAGGGA GCTTAGATCT CAGTGGATGT TCAAGTCTAG TGGAACTACC TTCCTTTAGC CATTTAACTA ATCTCCAAAA ATTATCACTT AAAGGATGCT CAAGGCTTGT ATCACTCCCA CAGCTTCCAG ATTCCCTAAT GGTCCTAGAT GCAGAAAATT GTGAGTCCCT AGAGAAAATA GATTGCTCTT TTTGCAATCC AGGTTTGCGT CTGAACTTCA ATAACTGCTT CAAATTGAAT AAAGAAGCAA GAGATCTCAT CATCCAGAGA TCAACTCTTG AATTTGCGGC CTTACCCGGT AAAGAAGTGC CTGCGTGCTT CACTTACAGA GCTTATGGGA GTTCCATAGC AGTGAAGTTG AATCAAAAGC CTCTTTGTAC ACCCACAAAA TTTAAGGCTT GCATCTTGGT TGTTAACAAG GCCGAACATG AGGTTGGTTT TAAGGAAAGC GGGAGGGTGT CTTGTCGAAT CAACTCCAAA CAGAAACAAT CAACTGATCG ATATTTATTT CTAACGGAGC ATCTATACAT TTTCAACGTT GAAGCAGAGG AGGTGACTTC CACCGAGCTT CTCTTTGAGT TCGAGCTCTG CGTTTTCAAT AAAACCTGGG GGATAAAAGA ATGCGGGTTA CTCCAAACTC TTGGAGCATC ATGTTGA
Length2787
Protein Sequence
Protein Residue
Map Locationscaffold_1: 31293135.. 31296293
Download Sequence
A.thaliana
AGI-codeAT3G44480.1
DescriptionDisease resistance protein (TIR-NBS-LRR class) family
TAIR curator summaryEncodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).
Alias[cog1][RPP1][recognition of peronospora parasitica 1]
Gene coexpression
MR
MR Locus Description
9.43398 Ahg915002 ATP binding
22.5832 Ahg926659 Toll-Interleukin-Resistance (TIR) domain family protein
25.4755 Ahg485626 alpha/beta-Hydrolases superfamily protein
42.3556 Ahg484424 armadillo repeat only 4
46.6476 Ahg922080
59.8749 Ahg922740 Protein kinase family protein with leucine-rich repeat domain
66.0681 Ahg951540 Disease resistance protein (CC-NBS-LRR class) family
68.9202 Ahg934192 acyl-CoA oxidase 5
83.3906 Ahg947216 Carbohydrate-binding X8 domain superfamily protein
85.0353 Ahg908904 Toll-Interleukin-Resistance (TIR) domain-containing protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression