Detail



ID : Ahg314259

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|314259|fgenesh1_pm.C_scaffold_1003039
Sequence
ATGGCGTCTG ACTTGCCGAT GAGCCCTCAT TTGGAGCAGA TTCACGGAGA AATCCGTGAC CATTTCCGAG CCCTCGCAAA TGGCTTTCAG AGGTTGGATA AGATCAAGGA TTCTAATAGA CAAAGCAAGC AACTCGAAGA ACTTGCTGAG AAGATGAGAG ACTGTAAAAG GTTGGTTAAG GAGTTTGATC GTGAACTCAA AGATGGGGAA GCTCGAAATT CTCCTGAAGT AAATAAGCAG TTGAATGATG AGAAACAATC TATGTTCAAA TTTCCCGCCT CATTTGTTTT CTGGGTCACC ATCGAAAAGC ATGTTGAGTC AGTGATTAAG GAACTCAACT CTTATGTTGC ACTAAGAAAA ACGTACTTGA ATACACTCGG CAACAAGAAA GTTGAACTTT TTGATATGGG AGCTGGAGTC AGCGGTGAAC CCACAGCTGA AGAAAACGTC CAAATGGCTT CATCAATGTC AAACCAAGAG CTTGTCGATG CTGGAATGAA AAGGATGGAC GAGACTGACC AGGCTATTGA ACGCTCTAAA CAGGTTGTGC ATCAGACGAT CGAAGTTGGC ACTCAAACTG CATCTAATTT AAAGGGACAG ACAGATCAAA TGGGTCGCGT TGTAAACGAC CTAGACACAA TTCAGTTCTC TATCAAGAAA GCTTCGCAGC TGGTGAAAGA GATAGGAAGA CAGGTGGCTA CTGATAAATG CATAATGGCG TTCCTGTTTC TGATTGTATG TGGTGTTATA GCTATAATCG TTGTGAAGAT CGTGAACCCA AACAACAAAG ACATCAGAGA CATCCCTGGA CTAGCTCCTC CAGCGCAATC AAGAAAGCTC TTGTACTTCA GAGAATAG 
Length858
Protein Sequence
Protein Residue
Map Locationscaffold_1: 23384160.. 23386656
Download Sequence
A.thaliana
AGI-codeAT1G48240.1
Descriptionnovel plant snare 12
TAIR curator summarymember of NPSN Gene Family
Alias[ATNPSN12][NPSN12][novel plant snare 12]
Gene coexpression
MR
MR Locus Description
6.7082 Ahg496612 RNA methyltransferase family protein
8.94427 Ahg482300 C-terminal domain phosphatase-like 3
11.3137 Ahg478183 ARM repeat superfamily protein
11.3578 Ahg496904 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
12.3288 Ahg937129 metalloendopeptidases;zinc ion binding;DNA binding
23.3666 Ahg473032 Protein of unknown function (DUF616)
24.4949 Ahg487418 Cyclin family protein
25.4558 Ahg483631 PLAC8 family protein
26.6083 Ahg321255 Zinc finger C-x8-C-x5-C-x3-H type family protein
28.3549 Ahg479119 Protein phosphatase 2C family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression