Detail



ID : Ahg937129

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|937129|scaffold_501320.1
Sequence
TCTAGTTTAG GGTTGTTTTG ATGGAAGCGA AGGTTCCTAG ACCTAGGGGA AGACCGAGGA AACGTCAGAG ATTAGAGGAT GATAATCGAA AATCGAACAA TCGAGGGAAG AAGCAGGTTT TGGAGGTGGA GCCGGCGGTG CCGATATCCT TACTTGGTAG TTATGTGCTG AAAGATTTTG ATGACAATGG AGTTTTTCTT GGGAAGATAG TGTCTTATGA TACTGGGTTA TATAGTGTGG TGTATGAGGA TGGTGATTCT GAGGAATTGG AGAGTGGTGA TCTTCGTCGT TTAATTATTG CGGATAGTTA CTTGGACAAT GAGTTACGTG TTAGAAGGAA TAAATTAGAT AAACTTATAC TGAAGGAGGA GAAAAAGAAA AGAAATTCCC CGGAGAACAA AGCGGTTGAG TTGCCAAATC AAGTAAATGG AGAGCAGGCA CCAGCAGTTA CGAAATCAAA TTCTCAAGCA GAAGTTGAAG ATGGTGATTC ATATAGTGAC TCAGATTTGT CTGAGAGTGA AGATAAGAGA GGTTCAGATC TTGACACTGA GGCTCCTATT GTTCTACCGG TGGATTTACC TCCTTCATCG GGGACAATTG GTATTCCAGA GGAGGCTGTG GCACATCTCT TATCTGTATA TGGGTTCTTA AGGTCATTTA GTTTTCAGCT ATATATCTGC CCATTTGAAC TCAATGATTT TGTGGGAGCG TTGAATTTCC CGGGACCAAA TTCTTTGTTG GATGCTGTTC ATGTGGCCTT GATGCGGGCG TTGAAGGGTC ATCTTGAGAG ACTTTCCTCA GACGAGTCTG TCCTGGCTTC AAAATGCTTG AGGTGCATTG ATTGGAGCTT GCTCGATGTG CTAACTTGGC CTGTTTATTT GGTTCAGTAC TTTACTGCGA TGGGGCATGC TAGTGGGCCT CAGTGGAACA TTTTTAATAA ATTTGTCGTG GAAAAGGAGT ACTACTCCTT ACCCGTTGGG ATGAAATTGA AGATCCTACA AATTCTCTGT GATGACATCT TTGATGTAGC AGATCTAAGA GACGAAATAG ATGCTCGCGA AGAATCTGAA ATTGGATTTG ATCCTGATAG AGTTGCCACC GGTCTTCCTG AAAATGTACC TAGACGGGTC CACCCCAGAT TCGCTAAAAC CTCAGCTTAC AAGGATAAAG GGGTTATTGA TAGCTCAACA AACGAGTCTA AAGATTTGGA TTCAAGATGT ACTGAAGGGG GTTCAAATGA AGTTAGTTCA GATCTAGATG GAAACAGCGA CGAATGTAGG ATTTGTGGAA TGGATGGAAC CTTACTTTGT TGTGATGGAT GTCCTTTAGC ATATCACTCA AGATGCATTG GTGTGGCCAA AATGTATATA CCAGACGGGC CATGGTTTTG TCTAGAGTGC ACTATTAACA AAAAGGGGCC AAAGATTGCT CATGGAACCT CACTTAGAGG AGCTGTACAG TTTGGAATGG ATCCACATGG GCGACTATTC TTGGGTACTT GCAATCACTT ACTGGTGCTT AACATATCTG TCAATGGAGA TGCAGTTGTC AAGTACTACA ATGTCAATGA CATATCAAAA GTTGTACTAG TGCTTTTATC TGCATCAAAC CATACACTAG AATATCTAGA GATTTGCAAA GCGATCACCC AATACTGGGA TCTTCCTGGA GGTATGATCT CCTTGAGGGA AGGGGAGACT GGTTTAGCTC AAGCAAAGGA TAGAGAGGAT GGCAAGGTTA CAGAGATGAC TAAGTCAGAT AGTGCAAATA TTTCCAATAG AAATCATACC CAGACTGTGT TTGACCTCCC GCCATCTACT TTGGGTAATA TTGACAATGC TGTTACAGGA GGTTCAAGTG GAATACAGGG GAAGAAATTG GATACTGGGG TTACCTACTT GGGTTTATCG TTTAAACCTC ACACATACAA CAATCATTAC ACAAATGGAG AATTGGCTGT ATCTGCTGCT GCCAGTTTGG CTGTCCTATC GTTAGAGGAA ACCCATGAAC CTGACCTTCG CAAGTACAAT AGTGCCAGGA AAGCTGCATC AAGTAACATC TTAGTGCAGA TGAAAGCATT TTCATTAGTA GCCTCACGTT TCTTCTGGCC AAGTCCTGAT AAGAAGGAGA TTACCAGGGA AAGATGTGGT TGGTGTCATT CTTGCAAACT CACATCTGCA AGCAGGAGAG GGTGCATGTT AAATGCAGCT GTAACGGGTG CCACTAAGGG TGCAATGAAG ATCTTCAGTG GTCTTTTTCC TTTAAAGAAT GGGGAGGGAG TGCTTTCAAG TATTGCAGCA TATATTCTAT ACCTAGAGGA AAGCTTGCGT GGTCTGATTG CTGGCCCATT TCTCAATGAA AGTCCCAGAA AACAGTGGCG TAAGCAGGTG GAGGAAGCCT CAACATGCAA AGCCCTAAAA GCACTCCTAC TTGAACTTGA GGAAAATATT TGCAGTATTG CTCTGTCAAG CGATTGGTTT AAACTGATGG ATGACTGGTT GGTAGAACAT TCTATTTTCC AAAGTGCTCC AGTTACTGTT GGGGTTACAC AGAAACGTGG ACCTGGTAGG AGGAAGCAAA GGACCCAGGC TGAAGTTACA GCTGAAGGTT CCGACGATGA TAGCTTTACA TGGTGGCGAG GAGGGAAGTT GTCAAAAGTT ATTTTATTGA AAGCAGTTTT GTCACAACCG GCAATAAGGA AAGCAGCTTG GCAAGGGGGT TCTAAAAAGA TTCCTGGATT TAATTATGGT GATGCTTCTT ACATCCCTAG GAGAAGCAGA CGGTCTATTT GGAAAGCTGC TGTTGAAAGT AGCAAGAACA TATCTCAGCT TGCTCTTCAG GTAAGATATC TAGATATGAA TTTAAGGTGG AGTGAACTTG TACGACCAGA GCAAAATCTC CAGGATGTCA AAGGCCCAGA GACTGATGTT GCCATTTTTA GAAATGCTCG TATATGTGAC AAAAAGCTTA GTGATAACAA GGTTAGCTAC GGAGTTTTCT TTGGAAATCA AAAGCATCTG CCATCACGCG TCATGAAGAA TGTAATTGAG GTCGAGAAAA CCCAAGATGG AAATGAAAAG TATTGGTTCC AAGAAGCCCG TGTTCCCTTA TATTTGATCA AAGAATTTGA AGAGAGTTTG CATAGAGTAC AGATTCCTTC TTCAACCAAG AAGCCGTCCA ATAAATTATC AAAGCTTCAG AGAAAGCAGC TGAAAGCTTC CCGCATGGAC ATATTTTCAT ATATAGCCTC AAGGAGGGAC AAGATGGAGA AATGTTCTTG TGCATCATGT GATAATGATG TTCTATTGCG GGATACAACA ACATGCAGTT CTTGCCAAGG ATTTTGTCAC AAGGAGTGCA CTTGGATGTC ACAACACACA AATGGAAAAG TTGAAGTTCT GGTCACCTGC AAACGGTGTT ACCTTGCAAA AAATCAAGTT CCAACAAATA TCAATCACAG ACAATCGACA ACACCCCAGC TCACGATCAA CGGACGACAT CAAAATGCAG TCACTCCAGT CATCAAGATT AAGCCTCCTA GTCAACAGAT CAACGGACGA CCTCAAAATG CAGTCACTCC AGTCATCAAG ATTAAGCCTC CTAGTCAACA ATTACCATCC CAGAAACCAC GGGAGAACGC TTCGGGAGTT AAACAAATCA CTCCTGATTC GACTGTGAAA TCCAAGAGTA AACAAAAGAC ACTGTCCTGT GGAGTCATAT GGAGGAAAAA GAATGTGGAG GACACTGGTG TTGATTTCAG AAATCAAAAC ATTCTCTTGG CTGGAAGATC AGATAAATCG AGTCTGGAAC CGGTTTGTGG GATCTGCCTA CAGCCATACA ATCCTGGTTT AACGTATATT CACTGTACAA AATGCGAAAA GTGGTTCCAC ACTGAAGCTG TTAAGCTCCA GGATTCACAA ATTCCTGAAG TTGTTGGGTT CAAATGTTGC AAATGTCGAC GTATACGATC CCCCGATTGC CCTTACATGG ATCCCAAACT CGTGGAACAG AAGCAGATCA AAAGAATAGT CTTCAAGAAC CAGAAACAGA GGCAAGGAAA TTCCGGGTTG GATTCTGATT CTGAAAGAAT GTCTGAACAA AAAGACTCGA AACCTTCTAC TCCCTTACCT GTCACTCCTT TATATCCTCC TGAAGACGTA TTTATTCCAG AGGATGATCC TCTCCTGGTC TCAGTTTCCA AAGTCGAACA AATCACACCC AGTAGTTTCG ATCTTGAATG GAGCACCGCT GCTTTTGCGC CGGGACCCCA AAAGCTACCG GTTAGAAGGC AAGTGAAACG AGAAGATTCT AATGCAGGCT ATCCTGAACT GCAGCCTATT GTGAAACCCG AGGCAGAGGA GCAAGCTTTA CCTGTTCTAA CAGAATGGGA TTCATCTGGT GAGCTACTAT TCGACTACGA GGACATGGAA TTTGAACCAC AAACTTATTT CTCGTTGACC GAGCTACTGA CAGCCGATGA TAGTGGTGGT GGTCAGTACG AGGTAAATGG CGATAAGATT GTTTCAGGAA ACCCTCACTT CGAACCAACA GAAGAAGAAG AGTGTGAAGA TATGGGTCCA TGTCAGAGAT GTTCTCAAAT GGATCCAGCG CCTGATCTTT TGTGCACGGT TTGTGGATTG CTAATACATT CTCACTGTTC TCCATGGGAA GAAGATCCAT CAGCGTTACC TGGAAGTAGC TGGAGCTGTG GTCAGTGCCG TGAGTGGCAG TAGCTGGACC CTCGGATTTC AAG 
Length4753
Protein Sequence
Protein Residue
Map Locationscaffold_5: 10916001.. 10922395
Download Sequence
A.thaliana
AGI-codeAT5G35210.1
Descriptionmetalloendopeptidases;zinc ion binding;DNA binding
TAIR curator summary
Alias[PTM][PHD type transcription factor with transmembrane domains]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg495713
4.47214 Ahg489919 Protein kinase superfamily protein
5 Ahg495467 phytosylfokine-alpha receptor 2
6 Ahg481838 pumilio 1
6 Ahg480298 Major facilitator superfamily protein
6.63325 Ahg491781
9.79796 Ahg492913 VPS54
9.79796 Ahg328440 glycine-rich protein
10.3923 Ahg495190 Protein of unknown function (DUF3414)
11.3137 Ahg318974
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression