Detail


ID : Ahg317922

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|317922|fgenesh1_pm.C_scaffold_3000938
Sequence
ATGGCGGCAG AACCTAACCC TAAGAATTTC CCTGTCCTCT CTTACGTCTT GGCTCGTCTC CCTTCTTTCA CCGCCAAATC CCCTTCCTCC TCCTCCTCCG TTCCTCCCTT TGATATCGAA CAACCACCAT CATCATCATC ATCATCATCA TCATCAAGCC AATCGATCGA AATCGTTACT CAGATGCCTC ATTTAACACA ACCAGATGTA CTCGCTTCAA TGACCAGTGC GATCTCTGAC GTCGCCGAGA CTCGATCTAT CCTTCGAACC CTAGGACCTA GACCTGATCA CGAGTCCGTC GACAAGGCTC GTGCTAAGCT CTCGGAAATC GAATCGTTCT TATCTGAATC GTTTGAGGAT ATCGCGCTTA CCGATTCGGC GGCGAAAGAT GAGAAGAGGA GACAAGAGAT GGATCAGGAG AAGACTTGGT GTGAGTCGGT TTTGAAGCTT GATGAGGTTC ATGCTTCGTA TGAGAAGCTT TTGAAAGAAG CAGAGGAGAG GCTTGTCAGG ATTTATGAAT CTGCTGAGAA GAATGCGGCG GAGGATGAGG AGAATGTTGC GGCGGTGGAG GTTAATGAGG AGGTTGTTGG GATATTGCAG CACGCTTCGG CCAATCCGGT GGATCGTGTG GATTTGTCTG GGAGGAAATT GAGATTGCTA CCTGAAGCTT TTGGGAGGAT TCAAGGGTTG CTTGTTCTTA ATCTTTCCAA CAATAAGCTT GAGCTGTCGT ATGGGTTAAT TCAAATTTTG CAAGCAATTG CTGCTGATGT CCATGCTAGC TCTTTTGTTG ATAGTTCTGA GGTTTATGTC CAACAGGCGA TTCCTGATTC AATAGCTGGA TTGCATAGTC TTGTTGAACT GGATGTCTCC ACGAATTCTC TGGAGACATT ACCTGATTCT ATCGGTTTAC TGTCCAAACT GAAAATCCTG AATGTTTCGA CTAACAAGCT CACATGCTTG CCTGACTCCA TCTGCCGCTG TGGGTCGTTG GTTATCTTAG ACGTGAGCTT CAACCGTCTC ACCTACTTAC CAACCAACAT TGGTCTCGAG CTAGTGAATC TAGAAAAGCT CCTGGTTCAG TATAACAAGA TCCGATCATT CCCGACCAAT ATAGGCGAAA TGAGATCCCT AAAACACTTG GACGCCCACT TCAACGAACT TCATGGCCTT CCTGATTCTT TCGTGTTGCT CACAAACCTC GAGTACTTAA ACCTAAGCAG CAACTTCAGT GATCTCAAGG ATCTCCCTTC CTCATTTGGG GACCTCATAA GCCTCCAAGA ACTCGACTTG AGTAACAACC AAATCCATGC CCTCCCAGAC ACTTTTGGCA CACTCGATAG CCTGACCAAA CTAAATGTGG ATCAGAACCC GCTCGTGGTC CCACCTGAGG AAGTGGTGAA GGAAGGTGTT GAAGCTGTGA AGACGTACAT GGGTCAGAGA AGGATCAGAA TGTTGGAAGA GGAAGAGAAG AAGAAAATGG AGGAGGAGAT GGAGCAGGCA AACGCCGGGT GGCTCACACG AACCACATCG AAACTGAAAA CTTATGTCGC AGATGTTTCA GAGTATCTCG GAACAAATTC TCCTCGAGAC CCTTACCTTG AGCGACAACT ATGA
Length1614
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT3G11330.1
Descriptionplant intracellular ras group-related LRR 9
TAIR curator summaryEncodes PIRL9, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
Alias[PIRL9][plant intracellular ras group-related LRR 9]
Gene coexpression
MR
MR Locus Description
5.2915 Ahg488895 golgi nucleotide sugar transporter 4
16.4317 Ahg940921 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
18.1659 Ahg475227
19.5959 Ahg929713 Plant protein of unknown function (DUF639)
20.9762 Ahg487121 Transducin/WD40 repeat-like superfamily protein
20.9762 Ahg471949 Transcription initiation factor TFIID subunit A
30.1993 Ahg931395 golgin candidate 1
35.7911 Ahg474570 DEA(D/H)-box RNA helicase family protein
40.6079 Ahg935227 Calcium-binding EF-hand family protein
41.7612 Ahg932042 ER lumen protein retaining receptor family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression