| Annotation |
|---|
| Description | jgi|Araly1|318610|fgenesh1_pm.C_scaffold_3001626 |
| Sequence |
ATGGAGGTTT TGCAAGATGG ATCGGAGAGA GATAAAACTC CTCCTCCTTC CTCTTCGTCT TCTTCGTCTC CCATTCCTGT CGTCACCAAT TTTTGGAAAG AATTTGATTT GGAGAAGGAG AAAAGCCTGC TTGACGAGCA AGGGCTTAGA ATAGCTGAAA ATCAAGAAAA CAGCCAAAAG AATCGGCGGA AGCTTGCAGA GAGCACTCGA GACTTCAAGA AAGCTTCCCC TGAGGACAAA CTTAGTATGT TTAATTCCCT CCTCAAGGGA TATCAAGAAG AAGTAGATAA TATTACCAAG AGGGCCAAGT TTGGGGAGAA TGCTTTCCTA AATATCTATC AGAAACTCTA TGAAGCACCA GATCCATTTC CTGCTCTTGC TTCTATTGCT GAGCAAGATC GTAAATTATC TGAAGTGGAA TCTGAGAATC GAAAAATGAA AGTTGAACTT GAGGAATTTA GGACAGAAGC CACTCATCTG AAAAATCAGC AGGCCACAAT AAGAAGGCTA GAAGAACGGA ACCGCCAGCT TGAGCAACAG ATGGAAGAAA AAATCAAAGA AGTTGTTGAG ATCAAGCAAC GAAATCTGGC TGAGGAAAAC CAGAAAACGA TGGAGCTTTT AAAGGATAGG GAGCAAGCTT TGCAAGATCA GTTAAGGCAA GCGAAAGACA GCGTCTCCAC TATGCAAAAA TTGCATGAGC TAGCACAGAG CCAACTTTTT GAAATCCGTG CTCAATCAGA TGAAGAGACC GCGGCGAAGC AATCTGAAGT TAGTCTATTG ATGGATGAAG TGGAGCGTGC TCAAACCCGG CTCCTTACTC TTGAGAGGGA AAAGGGACAT CTGCGTTCTC AGTTGCAAAC AGCTAATGAA GATACTGATA ACAAGAAAAG TGATAATGTT GATTCAAATA GTATGCTGGA GAACTCTTTA ACTGCAAAAG AGAAGATTAT TTCGGAGCTT AATATGGAGA TTCACAATGT TGAGACAGCT TTAGCAAATG AGCGAGAAAG TCATGTTGCT GAAATAAAGA AATTGAATTC TTTGCTCAAT AAAAAGAATT TTTATTTTGT TTTGAAACCT ACCGTCATTT TATTGGTATT AAACCAGGAT ACTGTCATTG AAGAGATGAA GAAAGAGCTT CAAGAACGAC CATCAGCAAA ATTAGTTGAT GATCTGCGCA AAAAAGTGAA AATTCTGCAG GCTGTAGGTT ACAATTCAAT TGAGGCTGAA GACTGGGATG CTGCTACCAC TGGTGAAGAG ATGAGCAAAA TGGAGTCGCT TCTTCTTGAT AAAAACAGAA AAATGGAACA TGAGGTCACT CAGTTAAAGG TTCAACTTTC TGAGAAAACT TCCTTGCTTG AGAAGGCTGA AGCCAAGGGA GAAGAACTGA CAGCTAAGGT TAATGAACAA CAAAGACTGA TACAAAAGTT GGAGGATGAT ATTTTGAAGG GTTACAGTTC AAAAGAGCGA AAAGGTGCTC TATTTGATGA GTGGGAGTTC TCAGAAGCAG GTGTGGCTGA GCAGTCTGAG CCTATGGATC AGAAACATGT TCCATCAGAT CAAGATCAAA GCTCAATGCT AAAAGTCATC TGCAGCCAAA GAGATCGGTT CCGAGCACGA TTACGGGAAA CAGAAGAGGA AATAAGGCGA TTAAAAGAGA AGATAGGATT TCTCACAGAC GAATTGGAGA AGACCAAAGC TGACAACGTC AAACTCTATG GGAAAATCCG TTATGTCCAA GACTATAACC ACGATAAAGT TGTTTCCCGA GGATCGAAAA AGTATGTGGA AGATCTTGAA AGTGGATTCA GCTCGGATGT CGAATCAAAA TACAAGAAAA TTTACGAAGA TGACATTAAC CCTTTTGCAG CATTCTCAAA AAAGGAAAGA GAGCAACGGA TCAAAGATTT GGGAATCAGA GATCGGATTA CGCTAAGCAG TGGTCGCTTC CTTCTAGGAA ACAAATACGC AAGGACATTT GCTTTCTTCT ACACAATAGG ATTGCACGTA CTTGTCTTCA CTTGTCTCTA CCGTATGTCT GCTTACAGCT ATCTCAGCCA TGGAGCAGAG GAGACTCTGA TGACAGAAGC AACCACAAAC CTCCCTCACG GTCTTTAA |
| Length | 2118 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 7456757.. 7461542 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G18480.1 |
| Description | CCAAT-displacement protein alternatively spliced product |
| TAIR curator summary | This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565–689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation. |
| Alias | [AtCASP][CASP][CCAAT-displacement protein alternatively spliced product] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.64575 |
Ahg923452 | |
| 4.79583 |
Ahg475814 | |
| 6.9282 |
Ahg928725 | pumilio 4 |
| 7.74597 |
Ahg341309 | Sterile alpha motif (SAM) domain-containing protein |
| 10.9087 |
Ahg492258 | PPPDE putative thiol peptidase family protein |
| 12.6491 |
Ahg940460 | |
| 12.6491 |
Ahg478983 | Leucine-rich repeat (LRR) family protein |
| 17.3205 |
Ahg471734 | SNARE-like superfamily protein |
| 21.0238 |
Ahg951624 | armadillo repeat only 2 |
| 22.3607 |
Ahg490643 | ER lumen protein retaining receptor family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|