| Annotation |
|---|
| Description | jgi|Araly1|328389|fgenesh1_pm.C_scaffold_7000616 |
| Sequence |
ATGGCCGATC ATATAGTTCT TTCTCTCCAA GCTCCTCGCT TTCTGATATT CCCTTGTTCT CTTCACCGTT CATGGAGATT TCCCGGATAT TCCGTTCCCG AGTTCCGATT CTCCTCTCAA CTACAGTTGG CTAATTCCAT TTCACCTTCA AAGTCTCCAG CTTCCTCTTC TTCTCCATGT CCTCCGGAGA ATTCTGCTCC AGAGCAGTTC GATCTCGTGT CCAGCACTCA GCTTAAGGAT GGAAGTCATG TCTTCCGGTT CGGGGATGCA AGTGAAATTG AGAAATATCT CGAGGCTCAA GAAAAAGCGA GATGCGTTGA GTTAGAAAAG CAAAATGCTA AGATTGCAGA AGAAGCAAGT GAACTTTCAA GGAAACAAGG GAAGAAATTG GTCAGTTCTA ATATTGAAAT AAGTTCTGAG AAAGAGGAAA CAGCTCCTTC CAATCTTAGT AATGTCATCA AAATTAAAAG AGTTCGTTCT CCTACTAAGA AGAAGAAAGA AACTGTGTAT GTATCACAGA GTGAAGATAA AGTTGATGCC AAGATTGCTA GTGTTTCCAA TCTGAGCTCC ATAGTTAGTG TAGCAGAAGC TACTCCAACT AGCTCTACTG AAGAAGAAGA AGAAGTTGTT GTTTCTGAGC CAATCAATGA GAAGGAAATC ACGGCTAAGT CATATAATGT AGAGCCTCTT TCTTCTCAAG TCATGGAGAA AGTTTCTGTC AATAAAATAG GAGACCGTGA GACAAATGGT TATCAACGAA TCACTGAGAA TCGTATGGAG GTTCAAGCAA TACCGTCATC ATCTTCCGCA CAACAGGAAG TTGTGCCTGT ATCCACCATT GAAATTGACG AGAATTTGAA TGTGAGGGAA AAGCCTGTGA AAAATATTGA AGCTGAGGAG AATCTTGTCG TGGAACCAAC AGCTACAGCT GCTGTGTTTC CTGATGAACT CGTTTCAACT TCAGAAGCAA CAGATCGCAG CGTTGATGAG ATTGCTCAAA AACCTGTAAT TGATACGTCT GAGGAAAACC TTATGAAAAC TTTTGAAGCT GAGAAGAATC TTGTAGTTGA ACCAACAGCT ACAGCGGCTG TGTCTTCTGA TGAACTCATT TCAACTTCAG AAGCAACACA CCACAGCGTT GATGAGATCT CTCAAAAGCC TGTTATTGAT ACGTCTGAGG AAAACCCTAT GAAAACTCCT GTTGAACCAG AAGCAACACA TTGCAGCATT GACGAGATCA CTGAAAAGCC TGTAGTTGAT ACGTCTGATG TGGAAAATGA TGGAGAAAAT GTGGCTTCAA CCATAGAAGA TGAAATAACT GTGAGGGATG ATAATGGTAG CATATCTAAA ACTGCCGATG ACACAAAAGG GGAAGATCTC CAACTTCCTG TACCTGAAAC GGCCAGTCTT GAACCCATTG AAGTGGCTTC TGACAGGTTA GCATTGGCAG GTCGTGAAGA TGCTTATTTT ATCTCTCACC ACAATTGGAT AGGTATTGCG GATGGAGTCT CTGAGTGGTC ATTTGAAGGA ATCAATAAGG GAATGTATGC TCAAGAACTC ATGAGCAACT GTGAAAAGAT TATTTCCGAT GAAGCTGATA AGATAAGTGA CCCAGTTCAA GTTCTCCATA GAAGTGTCAA TGAGACTAAG TCCTCTGGAT CATCAACAGC CTTAATTGCT CATCTTGACA ATAATGAACT CCACATCGCC AATATCGGAG ATTCAGGATT CATGGTTATT AGGGAGGGCA CAGTATTTCA GAAATCGTCT CCAATGTTCC ATCATTTTTG TTTTCCCTTA CATATTAGGC AAGGCGATGA TGTCCTAAAA CATGCAGAGG TTTACCATGT GATTCTGGAG GAGGGCGATG TTGTCATCGC AGCAACTGAT GGACTCTTTG ACAATTTGTA TGAGAAAGAA ATAGTTTCAA TAGTTTGCAG GTCACTGGAA CAGAGTTTGG AACCTCAGAA TATAGCAGAG TTGGTAGCTG AAAAGGCACA AGAAGTGGGA CGATCTGAGA CAGAGAGAAC GCCATTTGCA GACGCAGCTA AAGAAGAAGG ATATGATGGA CACAAAGGTG GTAAACTTGA TGCTGTTACT GTCATCGTTT CACTCGATCG AGTTCGTGAC CATGGCTACG ACAACTACAT GGAAGTCGAG AAGAAAATCC GTAAAGTCAT CAAATTTCAC AGCTTGATTC TCTCTCAACC CAACAACACA ATCGCAATCT CTCTTCTAGA CACGCTCGCT CGTCGTCTAG GTCTCGGCTT CAAGCAACAC GAACCAGGTG CTTTCCTCCT CAAATTCCCA CACGTATTCG AGATTTACGA GCACCCAGTT CAAAGAATCC TCTACTGTCG ATTAACCCGT AAAGCTTTGG ATCAAATCCG TCACGAGCAC GAAGCTGTTC TCGCCCAAAT ACCCGACGCC GTGACCCGGT TGCGGAAACT CGTTATGATG TCGAATACGG GTCGGATTCG TCTTGAACAT GTCAGGATTG CTCGGACTGA GTTTGGACTC CCTGAAGATT TCGAGTACTC TGTGATTCTG AAACATCCTC AGTTCTTTAG GCTCATTGAT GCTGAAGAGA CTCGAGATAA GTACATTGAG ATTGTGGAAA AGGATCCTAA TTTATCGATT TGTGCAATAG AGAGAGTTAG AGAGATTGAG TATAGAACAA AGGGAATTGA TGCAGAGGAT GTTCGATTCT CATTCGTTGT GAATTTTCCT CCTGGATTTA AGATTGGAAA GTATTTTCGA ATTGCTGTTT GGAAATGGCA GAGGCTTCCT TATTGGTCAC CCTATGAGGA TATTTCGGGT TACGATTTGA GATCGATGGA AGCCCAGAAT AGATTAGAGA AGAGAGCTGT TGCTTGTATC CATGAATTGC TTTCGTTGAC TGTGGAGAAG AAGATCACTC TTGAGAGAAT TGCTCATTTT AGGAATGTTA TGAATTTGCC TAAGAAGTTG AAAGAGTTTC TTCTGCAACA TCAAGGGATA TTTTACATAT CGACTCGTGG GAATTACGGG AAGCTTCATA CGGTGTTTCT TAGAGAGGCG TATAAGAGAG GGGAATTGGT TGAACCAAAT GATGTGTATT TAGCTAGGAG GAGATTAGCT GAGCTTGTGT TGATGAGTCC TAGAAAGGCT AAGGTTGATG CAGAGTTGGT TAGCTACAGA AATGGATTGG ATGATGAAGA TGATGTCGAA TGA |
| Length | 3213 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 3032981.. 3037940 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G33495.1 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein |
| TAIR curator summary | A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation. |
| Alias | [RPD1][ROOT PRIMORDIUM DEFECTIVE 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg484370 | plastid-lipid associated protein PAP / fibrillin family protein |
| 10.198 |
Ahg347582 | Transducin family protein / WD-40 repeat family protein |
| 10.9545 |
Ahg483815 | |
| 17.6635 |
Ahg895509 | Chaperonin-like RbcX protein |
| 19.4422 |
Ahg483146 | disproportionating enzyme 2 |
| 21.8174 |
Ahg357916 | |
| 23.516 |
Ahg472548 | |
| 27.1662 |
Ahg948342 | Protein of unknown function (DUF679) |
| 28.5307 |
Ahg344999 | glutamate receptor 3.5 |
| 36.9865 |
Ahg931869 | Protein kinase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|