Detail


ID : Ahg330061

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|330061|fgenesh1_pm.C_scaffold_7002288
Sequence
ATGGCGATTA ATTCAAGTCG CCATTTTTGC CCGACGACTA CTTCGGCGAA GTTTTCCGAT TCGTTGGGAA GCTCTTTCTG CAAGTTCCAT GGAAAAAGTT CGTCAATTTC ACTCAGGTCC TATATATTCG GTTTTTCTTT TATAAAAAAG GCTAAGCGGT TATCGTGTGA AGGTAGTGGT AGTAGCAGTA GGAATGAGAA TTGGAATAGA AACCAGAGGC AGAATCAATT TAGACCTTCA AAGGTAGTGT TGAATCGTCG AAAAGAAGAG AGGTTTTCGG ATTTAGGAGT TATGAGTGGT GAGAACAGTA GTCGAAGTAG TGATGTTGGT GGTGGTGGGA GTACAATGGA GAAGATTGTT GAGAAGTTGA AAAAGTATGG ATTTGTGGAT GATGATCAGT TTCAAGATAA GGAAGTTGAA CAAGAGAGAA GAATTGAGGA AAGGTCGGTG GAGGATAGAT TCTATGTCGA AGAAAGAAGA GGTGGATCCT CGGAGGAATC ACCATTTGGT GTGTTTGGAG GGAATGAAGT TAAGTTTCCT TGGGAGAAGG TGAGTTCTAT GGAGAAGAAG GAGTTGGTAA ATGGAGAGTG GACAGCGAAG AAGGAGAGTA GATACTTGTT GGCGGAGAGG ACTCTTTCGG AATCTGAGCT GAATCGGTTG AGGAATGTGA TGTTTCGAGC GAAGAGTAAG ATGAGAGTTA CGGGTGCAGG TGTTACTCAG GCTGTGGTAG ATGCAATTCA GGAGAAGTGG AAGAGCTCAG AGATTGTGAG ACTTAAGATT GAAGGAGCAA GTGCCCTAAA CATGAGAAGG ATGCATGAGA TATTAGAGAG AAAAACTGGT GGTTTGGTGA TTTGGAGGTC AGGAACTTCC ATCGCATTGT ACAATTACAA AGGTGGCAGT AACAGGGATG GATCAGGGAA TATGATCAAG CGAATATACA GAAGAGCAGA GACATTGCCG TCTTCCTTAC CTACGAATAC AAGTACAGTG GATCAAAGTG TTCAACTAGT GCATTTTCCT CAGCTAGAGA AGGAGCCAAC CGTTGTGGGA AATAAAGACA CGACATCTCC ACAAGAAGTA GAATATGAAG ATGAAATAAA TGAACTGTTA GAGGGCCTTG GTCCTCGGTA CACAGACTGG CAGGGAGGTT ATCCGTTACC TGTTGATGCT GATTTGCTTC CTGGGATCGT TCCTGGTTAT GAACCCCCTT TTAGGGTACT TCCTTATGGA GTGAGATCAA CTCTGGGAAC AAAGGAGGCT ACCTCTTTAA GAAGAATTGC CACAGTTCTT CCTCCACACT TTGCTTTAGG TCGAAGTAGA CAGCTGCAAG GGTTGGCAAC AGCCATGGTT AAGTTATGGC AAAAGAGTTT GATTGCCAAG GTTGCCCTTA AACGGGGTGT ACAACTGACT ACCAGCGAGA GAATGGCTGA GGACATCAAG GTAATAAGGA TCCACATCCG AGTAACATTT GATTGTTTAA TATTGACTGG AGGTATGCTG CTCTCGAGGA ACAAAGATTT CTTGGTTTTC TACAGAGGAA AGAATTTTTT GTCACTAGAA GTAGCTGAAG CATTAATGGA GAAGGAGAGG CTTGTAAGGA CTTTGCAAGA CGAAGAGGAA CAAGCACGTC TAAGGGCATC ATCGGCTCTG GTTGTCCCAA GTATAAAAGC TAATCAAAAC CTTGCAAGGA CTTTGCAAGA CGAAGAGGAA CAGTCACGTC CATCGGCTCT GGTTGTCCCA AGTACTAAAG CTAATCAAAC CCTTGTTTCT GCTGGTAGTC TTGGAGAAAC TCTTGATGCA ACTGGTAAGT GGGGGAAAAA TCTGGATAAC GATGATCATG TGGAGGAAAT GAAACAAGAG GTTGAGAGAA TGAGATCTGC AAAACTTGTC AGGAAGTTGG AAAGGAAACT TGCTTTTGCT GAGAAAAAGC TGCTGAAAGC TGAACGGGCT TTAGCTAAGG TGGAGGAATC TCTGAAGCCA GCAGAGCAGA GAACAGACCT TGAGGGCATA ACTGAGGAAG AGAGATTTAT GTTCCAAAAG CTCGGATTGA AGATGAAAGC TTTCTTACTT CTTGGTCGAA GAGGGGTGTT TGATGGGACT GTAGAGAACA TGCACTTGCA CTGGAAATAT CGGGAGCTGA TCAAGATTCT TGTAAAGGCT AAAAGTTTAG AGGGTGCGAA GAAAGTGGCA ATGGCCCTTG AAGCCGAGAG TGGAGGTATC CTGGTTTCTG TTGACAAAAT TTCCAAAGGG TATGCCGTAA TCGTGTATAG AGGAAAAGAC TATAAGCGTC CTACCACGTT GAGGCCTAAA AACCTCTTGA CAAAGAGGAA AGCTTTGGCA CGTTCTCTTG AGCTCCAGAA ACGTGAGGCT CTTATTAAAC ACATTGAGGC GGTACAGACG AGATCAGAGC AGCTGAGAGC TGAAATTGAA CAAGTGGAAC TTGTAAAAGA CAAGGGAGAT GAAGCGTTAT ACGACAAGCT TGACATGGCT TATTCTTCTG ATGAGGAGAC CGAAGAAACA GATGGAGAGG AAGATGACAT GTATTTAGAT ACATACGAAG ACGAGGGAGA AGATGGTGAA GAAGGTGAGA TTCAGGCCAA GGGTTCATTA TCTGAAACAG ATGTTGGATT TGGTTCAGAT GATGAACTCT GGGATTCAGA CGAATCAGAC AGAGAGTTTG GCAATGATTC TGCATCCTCC ACAACACCAG AAACAACCTT TGTAGATGTA CAGAACGAGG AACTTCATGT GCAACCATAA
Length2760
Protein Sequence
Protein Residue
Map Locationscaffold_7: 13088884.. 13092863
Download Sequence
A.thaliana
AGI-codeAT4G14510.1
DescriptionCRM family member 3B
TAIR curator summaryEncodes a CRM domain protein CFM3b. Homolog of CFM3a (AT3G23070). CFM3a is shown to function in the splicing of group IIB introns in chloroplasts.
Alias[ATCFM3B][CFM3B][CRM family member 3B]
Gene coexpression
MR
MR Locus Description
6.40312 Ahg477686 plastid transcriptionally active 3
10.9087 Ahg481103 Peroxidase superfamily protein
15.0997 Ahg920156 Transducin/WD40 repeat-like superfamily protein
15.8745 Ahg483292 nudix hydrolase homolog 23
20.4939 Ahg947790 Tetratricopeptide repeat (TPR)-like superfamily protein
20.4939 Ahg487264 pentatricopeptide (PPR) repeat-containing protein
22.6936 Ahg478019 DEA(D/H)-box RNA helicase family protein
23.6643 Ahg939382 Peptide chain release factor 1
23.6643 Ahg494276 lon protease 2
24 Ahg486162 P-loop containing nucleoside triphosphate hydrolases superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression