Detail



ID : Ahg334514

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|334514|fgenesh1_pg.C_scaffold_1001079
Sequence
ATGGGAGGTT GTATCTCTGT CTCGTTGTCA TGTGATCGAG TAGTGAATCA GATTTCTCAG TGTTTATGTG TCAGTGGTAA TTATATTCAT AACCTCTCTG AGAATCTGGC TTCTCTGCAG AAAGCCATGG GAGTGCTCAA GGCTAAGCGA GATGACGTGC AAGGAAGGGT AGATAGAGAA GAGTTTACTG GGCATCGTCG AAGGCTTGCT CAAGTCCAGG ATTCGATGCT CGACAAGGTA TGGAACTGTC TAATGGAAGA TAAAGTCGGG ATTGTGGGTC TGTATGGTAT GGGTGGAGTA GGAAAAACCA CCCTTCTCAC GCAGATCAAC AATAAGTTTT CTAAACTAGG TGGTGGATTT GATGTCGTGA TATGGGTTGT GGTGTCTAAA AATGCAACAG TACATAAGAT TCAAAGAAGC ATCGGGGAAA AACTAGGCCT TGTTGGGAAG AAGTGGGACG AGAAAAACAA AAACCAGAGA GCCCTTGACA TCCACAACGT TCTTAGGAGG AAGAAGTTTG TCTTGTTGTT GGATGATATA TGGGAAAAAG TGAACTTAAA TGTGATTGGA GTCCCGTATC CGAGTGGAGA AAACGGATGC AAAGTAGCAT TCACCACTCG TTCTAAGGAA GTTTGTGGAC GCATGGGGGT AGATGACCCG ATGGAAGTCA GTTGTTTAGA CACCAGAAAC GCCTGGGATT TGTTGAAAAA GAAAGTGGGG GAAAACACAT TAGGAAGCCA CCCAGACATT CCCCAGCTTG CACGCAAAGT TTCGGAAAAA TGTCGTGGTC TACCACTAGC ACTGAATGTT CTTGGTGAGA CCATGTCATG CAAGAGGACA ATACAAGAAT GGTGTCATGC AATTGAGGTT TTGACTTCAT CTGCTACAGA TTTTTCAGGA ATGGAAGATG AGGTTCTTCC AATTTTAAAA TATAGCTATG ATAGCTTGAA TGGGGAGGAT GCAAAGTCGT GTTTCCTATA TTGCTCTCTA TTTCCTGAAG ATTTTAAAAT CAGAAAAGAG ATGTTTATTG AATACTGGAT TTGTGAGGGA TTCATAGAAG AAAAGCAAGG TAGAGAAAAA GCATTCAACC AAGGTTATGA TATACTCGGT ACTCTTGTCC GTTCATCTTT ATTGTTGGAG GATAAAGATT TTGTGAGTAT GCATGATGTG GTTCGTGAGA TGGCTCTGTG GATATCATCT GATCTTGGAA AGCATAAAGA GCGATGTATT GTGCAAGCCG GTGTTGGATT AGATGAACTA CCTGAAGTCA AGAATTGGAG AGCTGTGAAA AGGATGTCGC TAATGAATAA TAATTTTGAA AACATATATG GCTGTCCCGA ATGCGTTGAA CTTATAACTC TGTTCCTTCA GAATAACTAC AAGTTGGTAG TCATCTCAAT GGAATTCTTT CGGTGTATGC CTAGTCTAAC TGTTTTGGAT CTATCAGAAA ATCACAGTCT TAGTGAACTG CCAGAAGAAA TATCAGAGTT GGTGTCCTTG CAGTATCTTG ATTTGTCCGG GACATATATA GAGCGACTAC CTCATGGTTT ACAAAAGTTG AGAAAGTTAG TACATCTGAA ACTGGAAAGG ACGAGGAGAC TTGAGAGCAT TTCAGGGATA TCATATTTGT CAAGTTTGAG AACATTAAGA CTAAGAGATT CAAAAACGAC ACTAGAGACG AGCCTAATGA AAGAACTACA GCTCTTAGAA CATTTAGAAC TCATAACCAC AAATATCTCC TCAAGTTTGG TTGGGGAATT GGTATATTAT CCCAGAGTAG GGAGATGTAT TCAACACATT TTTATTAGGG ACCACTGGGG CCGTCCAGAG GAATCAGTAG GAGTATTAGT TTTGCCAGCT ATAACTAATC TCTGTTACAT CTCCATATGG AACTGTTGGA TGTGGGAGAT AATGATAGAG AAGACACCAT GGAACAAAAA TCTAACAAGT CCCAACTTCT CAAACCTCTC TAATGTGCGT ATAGAAGGGT GTGATGGTTT AAAGGATTTG ACGTGGCTGC TGTTTGCTCC AAACCTTATT AATCTTCGCG TTTGGGGGTG TAAGCATCTG GAGGATATAA TAAGCAAAGA GAAAGCTGCG AGTGTTCTAG ATAAGGAGAT TCTTCCTTTC CAGAAACTAG AATGCCTGAA CTTGTATAAG TATTACTTGC CGTTCCTTGA CATGAACGGC AAAGTGACCG TCGCGGTCGA CGATAATCGT GACCGTTGTA TAAACATGCA TCCGGCTATT GCCCCTGGTC TTTCAGTGAC CGCCTTACCA TGGCAGGTTA ATAATCTTAC ATGTATCTAC ATAAACAAGA TTGAGACTGC AACATTTTTT GGTGAAATTC GACCAGTTGT TGGAGATGGG TGGGTCCTAT CCACGAATGT TTACTCTATG ATGCATACAG TAGCATCATT GGACTCTTGC ACTAAAGCAA AGGGGAGTTA TATTCACAAT CTCTCCGAGA ATCTGGCTTC TCTGGAGAAG GCCATGGGAG TGCTCAAGGG TCGGCAATAT GATGTGATAA GAAGGCTGGA AAGAGAAGAG TTTACAGGGC GTCAACAAAG GCTTTCCCAA GTTCAGTTTG ATGATCTGCT TCGTAGTAAA GAGGTTGAGC TTCAAAGAAG TTCAACAGTC CGTAAGATTC AAAGAGACAT AGCAGAAAAG GTTGGCCTTG GGGGGATGGA GTGGGGCGAG AAAAACGATA ACCAGATAGC CGTTGACATC CACAATGTCC TTAGGAGACG AAAATTTGTT TTGTTGTTGG ATGATATATG GGAGAAAGTG AATTTAAAAG CGGTTGGAGT CCCGTATCCA AGCAAAGATA ACGGATGCAA GGTAGCATTC ACTACTCGTT CTCGAGATGT GTGTGGGCGC ATGGGGGTTG ATGATCCGAT GGAAGTTAGC TGTCTACAAC CCGAAGAATC ATGGGATTTG TTCCAAATGA CAGTTGGGAA AAATACACTG GGAAGTCACC CAGACATTCC CGGACTTGCT AGAAAAGTCG CTAGGAAATG TCGTGGCCTA CCATTAGCAC TCAATGTTAT CGGTGAAGCT ATGGCATGCA AAAGAACAGT ACATGAATGG TCTCATGCCA TTGACGTTTT GACATCATCT GCCACAGATT TTTCAGGTAT GGAAGATGAA ATTCTCCATG TTTTGAAGTA TAGCTATGAT AATTTAAATG GGGAGCTGAT GAAATCCTGC TTCCTGTATT GCTCTCTGTT TCCTGAAGAT TATCTTATTG ATAAAGAGGG GTTGGTAGAC TACTGGATAT GTGAGGGATT TATAAATGAA AAAGAAGGCA GAGAGAGGAC ACTAAACCAA GGTTATGAGA TAATTGGTAC CCTTGTCCGT GCATGTTTGT TGATGGAGGA AGAAAGGAAC AAATCAAATG TAAAAATGCA TGATGTGGTT CGTGAGATGG CTCTATGGAT ATCATCCGAT CTTGGGAAGC AAAAGGAGAA ATGTATTGTG CGAGCTGGTG TTGGGTTATG TGAAGTACCA CAAGTCAAGG ATTGGAACAC TGTAAGAAAG ATGTCTTTGA TGAATAATGA GATTGAAGAG ATATTTGACA GTCACGAGTG TGCTGCACTT ACAACTCTAT TTCTCCAAAA GAACGACATG GTAAAGATCT CGGCTGAATT CTTTCGATGT ATGCCTCATC TGGTGGTTTT AGATCTATCA GAGAACCACA GTCTTGATGA ATTACCAGAA GAAATATCAG AGTTGGTCTC TTTGAGATAT TTCAACTTGT CATATACTTG TATACATCAA CTACCCGTAG GTTTATGGAC ATTGAAAAAG CTAATACATC TGAATCTCGA ACACATGAGC AGTCTTGGGA GTATATTAGG GATATCAAAT TTGTGGAATT TGAGGACATT GGGACTACGA GATTCCAAAC TGTTGCTAGA TATGAGTTTG GTGAAGGAGC TGCAGCTCTT AGAACATCTA GAAGTTGTGA CCCTAGATAT ATCATCAAGT TTGGTTGCAG AGCCATTGTT ATGCTCTCAC AGGTTGGTGG AATGTATAAA AGAGGTAGAT ATTAAGTATC TTAAGGAAGA ATCAGTGAGA GTATTGACTC TGCCAACCAT GGGTAATCTC CGTAGGCTCG GGATAAAAAT TTGTGGAATG AGGGAGATAA AGATAGAGAG TACAACTTCA TCATCGTCGC GAAACAAAAG TCCCACAACT CCATGCTTCT CAAACCTCTC CAGTGTCTTT ATTGCTAAAT GCCATGGTCT TAAGGATTTG ACGTGGCTGT TGTTTGCTCC GAATCTCACT TTTCTTGAAG TTGGGTTCTC AAAGGAAGTA GAGGATATAA TTAGCGAAGA GAAAGCTGAG GAGCATTCTT CAGCTACGAT TGTTCCTTTT AGGAAACTAG AAACGCTACA CCTATTAACT TCAGCGAAAA AAATGGCACT CTCGTTGCAA TCTCCGCCTT GTGCAACTCT CTCTGCTTCA ATCCAAAAGG GACGATGGAA GACGCTCGCC GCCGGATTCT CCGTTACTCC TCTTCCCGCC GTTAACTTCA GTCTCCGTCG ATCGATTCCT CGGATTCTTG CTTCCGCTAG TTCATCCTCC TCTCCATCGT CTTCGTCTCT CGAAGCTGGT GAGAACAATG AGCTAAATGC TGTTTCAGCT TTTAGTGAGA TTGTTCCTGA TACAGTTGTT TTCGATGACT TTGAGAGGTT CCCGCCGACT GCAGCTACTG TTAGCTCTGC TCTTCTTCTG GGCATCTGTG GTCTACCCGA TACCATTTTC CGCGCTATTG TCAACGTAGG TGGCGATCTT GTCAAACTCG TTCCAGGTCG AGTTTCAACT GAAGTGGATG CACGTCTTGC TTATGACACA AACGGCATCA TCCGAAAGGT TCATGATCTG CTGAGACTAT ACAATGAAAT CGATGTACCA CACGAGCGGC TCCTATTCAA AATCCCTGCA ACTTGGCAAG GTATTGAAGC TGCAAGATTG TTGGAATCTG AGGGAATCCA AACGCATATG ACTTTCGTTT ACAGCTTTGC TCAAGCTGCA GCAGCTGCTC AAGCCGGTGC TTCTGTCATT CAGATTTTCG TCGGTCGCCT CAGGGATTGG GCGCGTAATC ATTCGGGAGA TACCGAGATT GAATCTGCTA TTAAATCGGG AGAAGATCCC GGTCTGGCGT TGGTCAAAAG ATCATATAAC TACATTCACA AGTATGGTTA CAAGTCCAAG CTGATGGCTG CTGCTGTCCG GAACAAACAA GACTTGTTCA GTCTTCTTGG GGTCGATTAT GTCATTGCAC CATTAAAGGT ACTGCAATCT CTCAAAGACT CACCCGCCAT TCCCGACGAT GAAAAATACT CATTCGTTCG GAAACTTACT CCTGAAACCG CAACACATTA CCACTTCACA AACAAAGAGC TGATCAAATG GGACCAGCTA AGCTTGGCTT CAGCTATGGG TCCTGCATCA GTGGAGCTTT TATCAGCTGG TGTCGAAGGT TATGCGAACC AAGCGAAACG CGTTGAAGAG CTTTTCGGGA AGATTTGGCC ACCTCCTAAT GTCTAA 
Length5556
Protein Sequence
Protein Residue
Map Locationscaffold_1: 4700110.. 4710190
Download Sequence
A.thaliana
AGI-codeAT1G12210.1
DescriptionRPS5-like 1
TAIR curator summaryRFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.
Alias[RFL1][RPS5-like 1]
Gene coexpression
MR
MR Locus Description
1 Ahg942561 general regulatory factor 1
7.4162 Ahg487641 syntaxin of plants 132
15.0997 Ahg496629 splicing factor, putative
18.5742 Ahg491014 Serine carboxypeptidase S28 family protein
21.6564 Ahg486456 RAB GDP dissociation inhibitor 2
22.9129 Ahg487372 arginine-tRNA protein transferase 1
26.8328 Ahg488531 Plant protein of unknown function (DUF827)
29.6985 Ahg486257
30.8058 Ahg496639 conserved peptide upstream open reading frame 40
34.8568 Ahg358984 NSP (nuclear shuttle protein)-interacting GTPase
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression