| Annotation |
|---|
| Description | jgi|Araly1|358984|fgenesh1_pg.C_scaffold_9000024 |
| Sequence |
ATGGCGAATC GAGTTAAAGA AGACGAGAAG AACGAGAAGA TTATTAGGAG TCTTCTCAAA CTTCCTGAGA ATAAGAGATG TATAAACTGT AACAGCCTTG GACCACAATA TGTTTGTACT ACTTTCTGGA CTTTTGTTTG TACCAACTGC AGTGGAATAC ACCGTGAGTT TACACACCGT GTTAAATCGA TATCAATGGC GAAATTTACC TCACAAGAAG TTACTGCTTT AAAAGAAGGT GGAAATAAGC ATGCTAAGGA TATTTATTTT AAAGGACTGG ATCAACAGAG GCAGTCAGTG CCTGACGGAA GTAATGTTGA GCGGTTAAGG GACTTCATCA GACATGCGTA TGTAAATAAA AGGTATTCGA ATGAGAAGAA TGATGACAAG TCTCCAAGTG AGACACGTAG TTCTAGTGGC TCTCGAAGTC CACCATATGA AGATGTATAT GACCGTCGTT ACAGCGACAG ATCAAGTCCT GGTGGGAGAA GTCCAGGGTT TGAGCCAGGT AGCAGGAATG CTGTTAATAA CAGGAAAAGC CCTGCTCGTC CTGAGATCCT GAATGATTGG CGCAGAGAAG ATAGATTTGG GGGTAAAAAG ACATCAGAAG AGGGCTCCCA GTCACCTGAG CAAGTAAAAG ACTTGGGCTC AGCTAGCCCT CCTGTAGCTC GACCTGTTAG GGAAATTTTA GGTGACAGTG TTATTCCTCT TCGCGTGGGA GAGCCTCCAA AACCCCCTGT CAGCCGAAAT ACCGATGCTT CAACACATGC AAAGTCAGCT ACACCATTGA GTAGTTTAAT GGCCACAAAT GAGAAGCCAC CAGAAGCAAA GCTAGAGACT GCTTTAAGCC TGATTGATTT TGATACTGAT TTTGAACCTC CTGCTCCATC TGTTGCAATA CAAGCACCAT CGACCACACC TCAGACTGTT CCACAGCCAG CAAGTTCATC TAATGATAAC TGGGCGTCTT TCGATGCTGC ACCCAGTGCC CCTAGTTTAA ATGTGTCGCA ACCACCACCC AATGGAAACA CACTGGATTC AATTCTCTCT CAGTTGGCAG TGAATTCTTC TGTGCCGGGT CAGACGTCTA TACCATCTAA CGGACCTGTG CATCTTGGTC ATTCCACGTC ACAAATCTTT GCACCATTTC CGAATGAGCA TTCGAGTGAA CAGCCATGGA ACACAGAACT TGCATCTAAT GTACATAGGT CAATGAGTGC ACCGTCATTA CAACCTCTTC ATGGAGTCCC TTCTGGTGGC CAGCAGTCTT CTGAAGTTAA ACCTTCCGGA AGATCAGAAT TACCTGCGGA TTTATTCGCT GTAACCTACC CATCATACCA TGCACCAGCG CCTGGGTGGC AAGCTGGTCC ACCTCATGCT ATGCATTATG GCATGCAGCA GTATAATAAC CCTGTGCCAT ACCAGAATGT TCCGCAACCA GCCAAGTCAA TGAACCCTTT TGACTTCAGC CCTGGGCCTC CATCACAAAC GCAAACGGAA AATCTGTTCC CTTCCATGGC TCCTCTGCAA GGTGCATTAC CTCCTTCAGG CATGATGCCT TCTCAAGGAG TACACAACCA ATTCAATATA CCTTCTCAAG TCTCAGCCCA TCCATCGGCA ATGCCACCAA GGTACATGTC TTCTCAATTA CCAGGAAGCA TGCCACCTAG CAATGTAAAC CCAATTGGCG GCATGAACGC TTCATATGAC GCCCAACAAA CATATCAAAA TTTCGGAAGC TCGTTTGCTG CTGCAGTTCC TTTGAACCCA CCTTCTTTCC AATCAGGAGG AAACCCGTTT GGGTAA |
| Length | 1806 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_9: 315797.. 318852 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G13350.1 |
| Description | NSP (nuclear shuttle protein)-interacting GTPase |
| TAIR curator summary | Encodes a GTPase that interacts with nuclear shuttle proteins (NSPs) from a number of different plant viruses. The gene is widely expressed and NIG transcript levels do not rise in response to viral infection. This cytoplasmic protein does not directly interact with a viral movement protein (MP), but, it does promote the movement of NSP from the nucleus to the cytoplasm. Overexpression of NIG in Arabidopsis plants renders them more sensitive to geminivirus infection. |
| Alias | [NIG][NSP (nuclear shuttle protein)-interacting GTPase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg494671 | casein kinase I-like 8 |
| 4.89898 |
Ahg495036 | Leucine-rich repeat protein kinase family protein |
| 5.2915 |
Ahg490301 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 6.32456 |
Ahg475195 | secretory carrier 3 |
| 7.48331 |
Ahg477488 | Rad23 UV excision repair protein family |
| 9 |
Ahg472400 | Calcium-binding EF hand family protein |
| 11.5758 |
Ahg936137 | nodulin-related protein 1 |
| 12 |
Ahg946319 | Protein kinase superfamily protein |
| 12.3288 |
Ahg493493 | Sec23/Sec24 protein transport family protein |
| 15.4272 |
Ahg473294 | Coatomer epsilon subunit |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|