| Annotation |
|---|
| Description | jgi|Araly1|342166|fgenesh1_pg.C_scaffold_3001929 |
| Sequence |
ATGACGACGA CTCAGAGCGC TATGAGAATG GTTGAGGGTG ATCATATAAA AAATTGGCAG GCTTCTAGGG ATAGTGGGAT CTTTGGTTCA CTTGATATGG CAGTTGAAGA TTTAGGATTC TTAATGAAAA GAAATAGGTT GGATAGTGGC GATCATACCG GGAAAATCCC TAGTAGGAGC GGAAGTGCGC CGCCTAGCAT GGAAGGTTCC GTTGCAGCTC TTAGGAATCT CTTGAAACAA CAAGAAGGTA GTAGCTCTGA AGTTTTAAGT AGGGCTATTG AGAATTATGA CTCGGAAGAA GAGATACGTA GCGATCCTGC ATATGTAGCT TACTATTTGT CGAACATCAA CTTGAATCCG AGACTCCCTC CTCCGTTAAT CTCACGGGAG AATCAGCACT TGTTGCGTCA TTTCGGTGGG GTTGGTGATA ATAATCAGAG TCCAACAACT TCTTGGGATA ATATGGGGAT AAGGTCCTCC TTGCATTCTT CTAGAACTGC TCTTTCGACT CATAGAGAGG AGCCCGAGGA TGAGGCATCA TCTGGGGAAC AACAAGCTTA TGCTTCTTTG GCTGGTCGTC GTAAGAGCAT AGCTGATATG ATTCAGGAAG ATTTCCCTCT TACACTTTCT TCTGTGTTCA AGCGGCCTCA TTCGGCAGGA AATCGTCCAA TAGCACAAGA CATCCATGCC ATTTCCTCTG ATACATCTTC AGAAAACACG AGAAGATTAC CGGAGTCTGA TATAAATTCG GTTAATCTGC TGAGGGAGAC AGATTCTCTC TCCATCGATG CTATTGCTAG TGAAGATCCC TTTACCACTG ATTTGGGCTC ACAAAGTTCT ACTAATGTAC AGAATGAGAG ATTAAACGCG AGGCGAGCGA GCCATGAGGA CAACAATCTA TCTGTTTTTG GTGCTTCTCC TCCGTCCTCT GTTGCTTCAA GAATGAGGAG GAACCAAGAA GACCAACAAT CTCAGGGAAG GAGAATGCCT CTGCAATACA CACCTTCATC GTATCAGGTT CAGGCTAGTT CGCCACAACA AATGACCTAT CCGAGGATGG GCGGTACACA GGACATGATG CAGAGCTTAC CAAAGATTGC AACTGGCGAG GTACATTCGA CTTTCCAATC TCCTCACGGT TTGGCACCGC CTCCCATGTA TACATCTACA GCAGGATATA TGACATCTCT GAGCCCATTT TACCATCAAA ATTTTCAGTC CTCGGGTATG TACCTCCCGC AATATAATTA TGGCAGTTAC CCTCCTGGCT CTGGTATTGT CCCTCAATAT ATGAGTGGAT ACCCATCGCA TGAAGCAACT GTTCCTATGC CATATGATAT CTCATCTACT TCTTTGGGCT ACAACAACGC TCGGCTGCTA CCTGGAGTAT CATCGAGTGG ACAAAACATT CCTTCGCTTG TGGATCCTTT TCAGTTGCAA TATTTTCAAC AGGCTCAAGT GGACGCGTAT GCTCCTCCGT TTCAGAGCAG CACTGATTCT TTTGGGCAGA AAGACCAACA AGCTGCTGGC TATATGGCAA ATCATGAACC TCTCAACAGT CCATTGAGTC CGAGTTACGG GATGCAAAGT CCGCGGCACA TGGGGAATTA TTTTGCAGTG CCACCTGGTG TAAGAGTCAT GCCGCAGTAT CCAGGATCAC CTCTTGCTAG TCCGGTGATG CCTTCCTCAC CGGTTGGTGG AATGATGAGC CACTTTGGAA GACGAAGTGA AACAAGGTAT CATCAACAAG GGCCAAGTAG AAACACTGGG ATCTACCCTG GTGGATGGCA AGGGAACAGA GGAGGAGCCA GCAGCATCGT TGATGATCTA AAAAGACATT CTTTTCTTGA TGAACTCAAG TCTCCAAACG CTCGGAAACT CGAGCTGTCT GATATTGCAG GGCGCGTTGT TGAATTCAGG CACGTCGATC AGCATGGCAG CCGGTTTATT CAACAGAAGT TGGAGCATTG CTCCGATGAG GAGAAGGCAT CTGTTTTCAG TGAGGTTCTT CCACAAGCTT CAAAATTGAT GACTGACGTT TTTGGAAATT ATGTCATCCA AAAATTCATA GAACATGGAA CTCCGGCCCA GAGAGAAGAA CTTGTGAAGC AACTTGCTGG TCAGATGGTT TCACTAAGCT TACAAATGTA TGGATGTCGT GTGATACAAA AGGCCCTTGA AGTGATAGAT GTTGACCAAA AGACAGAACT AATTCGTGAG CTCGATGGAA ATGTGCTGAA GTGTGTTAGA GATCAAAACG GAAATCATGT TATCCAAAAG TGTATCGAGA GTATGCCTGC CGGTAGGATT GGATTCGTAA TTGCTGCTTT CCGTGGTCAA GTCGCCACTC TTTCTACTCA CCCTTATGGA TGCCGAGTTA TCCAGAGAAT CTTGGAGCAT TGTTCAGATG ATGAGGAGAC TCATTGTATA ATCGATGAAA TATTGGAATC TGCGTTTGCT CTTGCTCATG ATCAGTATGG GAATTATGTC ACTCAGCATG TCCTGGAGAG AGGGAAGCCC GACGAAAGGA GACAGATCAT TGAGAAGTTG ACAGGGAATG TTGTTCAGAT GAGTCAGCAC AAATACGCAT CTAACGTTGT GGAGAAGTGT CTGGAACACG CTGATAGTAC TGAGAGAGAG TTCCTGATTG AAGAGATAAT GGGAAAATCC GAGGAAGACA ATCACTTGCT AGCGATGATG AAGGATCAGT TTGCAAATTA CGTGGTCCAG AAAGTCTTGG AGATCAGTAA AGATCAGCAA AGGGAGATTC TGGTGCAGAG GATGAAAATT CATCTCCAGA GTTTGCGGAA ATACACATAC GGGAAACACA TAGTAGCCCG ATTCGAACAA CTGTTTGGTG AAGAGAGTGA AGTCTCAGAA GAGGGAACAG AAGGTTAG |
| Length | 2898 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 8328236.. 8331806 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G20250.1 |
| Description | pumilio 5 |
| TAIR curator summary | Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. |
| Alias | [APUM5][PUM5][pumilio 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.44949 |
Ahg492879 | K+ uptake permease 9 |
| 6.48074 |
Ahg478307 | Protein kinase superfamily protein |
| 11.7898 |
Ahg492421 | MAC/Perforin domain-containing protein |
| 12 |
Ahg490342 | sucrose synthase 3 |
| 12.4097 |
Ahg950590 | smr (Small MutS Related) domain-containing protein |
| 14.7986 |
Ahg485516 | conserved peptide upstream open reading frame 44 |
| 15.0333 |
Ahg899419 | Sec14p-like phosphatidylinositol transfer family protein |
| 16 |
Ahg496189 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| 16.8523 |
Ahg937652 | phosphate transporter 3;2 |
| 17.0587 |
Ahg927006 | enoyl-CoA hydratase 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|