| Annotation |
|---|
| Description | jgi|Araly1|342636|fgenesh1_pg.C_scaffold_3002399 |
| Sequence |
ATGAAAAGCT TGCATGTGGC GGCAAACGGC GAAGATCTGG CTGAGGATTG TGGAATACTA GCCGGAGACG CTGATGATGC TGCTTTGATG GATGGAATGG ATGAAGTTGG TAGAGAGATC TGGCTAGATG ACCATGGAGG AGATCATAAT CATGTTCATG TTCATAGTCA TGAAGATGAT GATTTGATTG TTCATCATGA CCCTTCAATA TTCTATGGAG ATCTCCCAAC GCTTCCTGAT TTCCCATGCA TCTCGTCATC ATCATCTTCT TCAACATCTC CAGCTCCTGT CAACGCAATC GTCTCTTCAG CATCTTCCTC TTCGGCAGCT TCTTCCTCCA CTTCCTCAGC TGCTTCTTGG GCCATATTGA GATCAGATGG AGAAGATCCG ACTCCAAACC AAAACCAATA CGCATCAGGT AACTGTGACG ACTCTTCTGG CGCATTGCAA TCCACAGGTT CCATGGAGAT TCCATTAGAC AATAGTCAAG GCTTCGGTTG CGGTGAAGGC GGTGGTGATT GCATTGATAT GATGGAGACT TTCGGGTATA TGGATCTACT TGATAGCAAC GAGTTCTTTG ATACCTCAGC TATCTTCAGC CAAGACGACG ACACGCAAAA CCCTAACTTG ATGGACCAAA CACTCGAGAG ACAACAAGAC CAGGTTGTTG TTCCGATGTT GGAGAAAAAT AGTGGTGGAG ACATGCAAAT GATGAATTCT TCCTTGGAAC AAGACGATGA TCTAGCTACT GTGTTCTTAG AGTGGCTAAA GAACAACAAG GAGACTGTGT CGGCTGAGGA TTTGAGGAAA GTGAAGATAA AGAAAGCAAC GATAGAGTCA GCGGCGAGAA GGCTTGGCGG TGGTAAAGAA GCGATGAAGC AGCTTTTGAA GCTGATTCTT GAATGGGTCC AAACTAATCA CTTACAAAGA AGACGCACCA CCACCAACAA CAACAACAAC TTCTCTTATC AACATTCATT CCAACAAGAT CCATTTCAAA ACCCTAACCC TAATAACAAC AACCTAATCC CACCGTCTGA CCAAACCTGT TTCTCACCTT CTACATGGGT TCCTCCACCA CCACCACAAC AAGCTTTTGT CTCCGACCCG GGTTTTGGAT ACATGCCTGC TCCAAACTAT CCACCACCGG GAGAGTTCCT TCCTTTACTT GAATCTCCAC CATCATGGCC ACCACCACCA CCACCACCGC AGTCTGGTCC TATGCCACAT CAACAATTCG CTATGCCACC AAACACGCAG TATAATCAAT TTGGAGAGCC AACAGGTTTC ACAGGATACA ACATGAATCC GTATCAATAT CCTTATGTTC CTGCAGGACA GGTGAGAGAT CAGAGATTGC TACGTTTGTG TTCCTCAGCA ACTAAAGAGG CAAGAAAAAA ACGGATGGCT AGACAGCGGA GGTTCTTGTC TCACCACCAC AGACATAACA ACAACAACAA CAATAATCAG CAGAACCAGA CCCAAATCGG AGAGACCTGT GCCGCCGTGG CTCCACAACT TAACCCTGTG GCCACAACCG CCACCGGAGG GACCTGGATG TATTGGCCTA ATGTCCCGGC TGCGCCGCCG CCTCAATTAC CACCGGCGAT GGAGACTCAG TTACCAACCA TGGACCGAGC TGGCTCTCTT GCTGCTATGC CACGTCAGCA GGTGGTACCA GATCGTCGGC AGGGATGGAA ACCAGAAAAG AATTTGCGGT TTCTCTTGCA GAAAGTCTTG AAGCAAAGCG ACGTGGGTAA CCTCGGAAGG ATCGTCTTAC CAAAAAAAGA AGCTGAGACA CACTTGCCGG AGCTAGAGGC AAGAGATGGC ATCTCTCTGG CCATGGAAGA CATCGGAACC TCTCGTGTTT GGAACATGCG CTACAGGTTT TGGCCTAACA ACAAAAGCAG GATGTATCTC CTCGAGAACA CCGGTGATTT TGTGAAAACT AATGGGCTCC AAGAAGGTGA TTTCATAGTC ATATACTCCG ACGTCAAATG TGGCAAATAT TTGATACGTG GTGTTAAAGT AAGACAACCG ACGGGACAAA AGCCGGAGGC TCCGCCTTCA TCAGCAGCCG CCACGAAGAG ACAAAACAAG TCGCAGAGGA ACATTAACAA TAACTCTCCG TCTGCGAATG TGGTGGTCGC TTCACCAACT TCTCAAACTG TTAAATGA |
| Length | 2178 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 11286216.. 11289032 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G24650.1 |
| Description | AP2/B3-like transcriptional factor family protein |
| TAIR curator summary | Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. Alternative splicing of ABI3 is developmentally regulated by SUA (AT3G54230). |
| Alias | [ABI3][ABI3][SIS10][ABA INSENSITIVE 3][ABSCISIC ACID INSENSITIVE 3][SUGAR INSENSITIVE 10] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg945592 | |
| 3.16228 |
Ahg359114 | transposable element gene |
| 6.9282 |
Ahg351608 | Protein of Unknown Function (DUF239) |
| 8 |
Ahg335836 | EF hand calcium-binding protein family |
| 8.06226 |
Ahg904884 | RNA-binding protein |
| 9.16515 |
Ahg338146 | KNOX/ELK homeobox transcription factor |
| 10.247 |
Ahg490013 | Protein of unknown function (DUF1191) |
| 10.4881 |
Ahg932866 | |
| 10.8167 |
Ahg950383 | Auxin efflux carrier family protein |
| 11.225 |
Ahg929024 | Basic-leucine zipper (bZIP) transcription factor family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|