| Annotation |
|---|
| Description | jgi|Araly1|950383|scaffold_802270.1 |
| Sequence |
TCGCCGGAAA ATAAAGCAAA ATGATCACCG GCAAAGACAT GTACGACGTT TTAGCGGCTA TGGTGCCGCT ATACGTTGCT ATGATATTAG CCTACGGTTC GGTACGATGG TGGGGAATAT TTACACCGGA CCAATGTTCC GGTATAAACC GGTTTGTTGC GGTTTTCGCA GTTCCTCTTC TTTCTTTCCA TTTCATCTCC TCCAATGATC CTTATGCAAT GAATTACCAC TTCCTCGCCG CTGATTCTCT TCAGAAAGTC GTTATCCTCG CCGCACTCTT TCTTTGGCAG GCGTTTAGCC GCAGAGGAAG CCTAGAATGG ATGATAACGC TCTTCTCGCT CTCAACACTA CCAAACACGC TGGTAATGGG AATCCCATTG CTTCGGGCGA TGTACGGGGA CTTCTCCGGT AACCTAATGG TGCAGATCGT GGTGCTTCAG AGCATCATAT GGTATACATT AATGCTCTTC TTGTTTGAGT TCCGTGGTGC TAAGCTTCTG ATCTCCGAGC AGTTCCCGGA GACGGCTGGT TCAATTACTT CCTTCCGAGT TGATTCTGAT GTTATCTCTC TCAATGGCCG TGAACCCCTC CAGACCGATG CGGAGATAGG AGACGACGGA AAGCTACACG TGGTGGTTCG AAGATCAAGC GCCGCCTCAT CAATGATCTC ATCATTCAAC AAATCTCACG GCGGAGGACT TAACTCCTCC ATGATAACGC CACGAGCTTC AAATCTCACC GGCGTAGAGA TTTACTCCGT TCAATCGTCA CGAGAGCCGA CGCCGAGAGC TTCGAGCTTT AATCAGACAG ATTTCTACGC AATGTTTAAC GCAAGCAAAG CTCCGAGCCC TCGTCACGGT TACACTAATA GCTACGGAGG CGCCGGAGCT GGTCCCGGTG GAGATGTTTA CTCGCTTCAG TCTTCCAAAG GCGTGACGCC AAGAACGTCT AATTTTGATG AGGAAGTTAT GAAGACGGCA AAGAAAGCAG GAAGAGGAGG GAGAAGTATG AGTGGGGAAT TATACAACAA TAATAGTGTT CCGTCGTACC CACCACCGAA CCCAATGTTC ACGGGGTCAA CGAGTGGAGC AAGTGGAGTC AAGAAAAAGG AAAGTGGTGG CGGAGGAAGC GGTGGAGGCG GAGGAGGAGT AGGAGGACAG AACAAGGAGA TGAACATGTT CGTGTGGAGT TCGAGTGCTT CTCCGGTGTC GGAAGCCAAC GCGAGGAATG CTATGACCAG AGGTTCCTCC ACCGATGTAT CCACCGACCC TAAAGTTTCT ATTCCTTCTC ACGACAACCT CGCTTCTAAA GCGATGCAGA ATCTGATAGA GAACATGTCA CCGGGAAGAA AAGGGCATGT GGAAATGGAC CAAGACGGTA ATAACGAGGG AAAGTCACCT TACATGGGCA AAAAAGGTAG TGACGTGGAA GACGGCGGTC CTGGTCCGAG GAAACAGCAG ATGCCGCCGG CGAGTGTGAT GACGAGACTA ATACTGATAA TGGTTTGGAG AAAACTTATT AGAAACCCTA ACACTTACTC TAGTCTCTTT GGCCTCGCTT GGTCCCTAGT TTCCTTCAAG TGGAATATAA AGATGCCAAC GATAATGAGT GGATCGATTT CAATATTATC TGATGCTGGT CTTGGAATGG CTATGTTTAG TCTTGGTCTA TTTATGGCAT TGCAACCAAA GATTATTGCG TGCGGAAAGT CAGTAGCAGT GTTTGCGATG GCCGTAAGGT TCTTGACCGG ACCGGCCGTG ATCGCCGCCA CCTCAATTGC AATTGGTATT CGAGGTGATC TCCTCCATAT CGCCATCGTT CAGGCTGCTC TCCCTCAAGG AATTGTTCCT TTTGTTTTCG CCAAAGAATA TAACGTCCAT CCTGATATTC TCAGCACTGC GGTTATATTC GGAATGCTGG TTGCTTTGCC TGTAACAGTA CTCTACTACG TTCTTTTGGG GCTTTAAGTT ATATAATCAA AACGTAT |
| Length | 1987 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 16826728.. 16830534 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G57090.1 |
| Description | Auxin efflux carrier family protein |
| TAIR curator summary | Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. |
| Alias | [AGR][AGR1][ATPIN2][EIR1][MM31][PIN2][WAV6][AGRAVITROPIC ROOT][AGRAVITROPIC ROOT 1][ARABIDOPSIS THALIANA PIN-FORMED 2][ETHYLENE INSENSITIVE ROOT 1][PIN-FORMED 2][WAVY ROOTS 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.31662 |
Ahg916294 | |
| 4.58258 |
Ahg351609 | Protein of Unknown Function (DUF239) |
| 4.89898 |
Ahg494865 | Pectin lyase-like superfamily protein |
| 5.47723 |
Ahg483350 | late embryogenesis abundant domain-containing protein / LEA domain-containing protein |
| 5.91608 |
Ahg901222 | homeobox-3 |
| 6.48074 |
Ahg478320 | GDSL-like Lipase/Acylhydrolase superfamily protein |
| 6.7082 |
Ahg355720 | |
| 6.78233 |
Ahg921700 | ENTH/VHS/GAT family protein |
| 6.9282 |
Ahg942510 | transposable element gene |
| 7.2111 |
Ahg481664 | transposable element gene |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|