Detail


ID : Ahg344496

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|344496|fgenesh1_pg.C_scaffold_4000838
Sequence
ATGAGAGTCC CACTAAAAGA TTTCTTGAGA TTCTTAGTAC TCATTCTTTC TCTTAGTGGT GCTTCAGTTG CTGCAGATGC AACGGTGAAA CAAAACTTGA ATAGGTATGA GACTGATAGT GGTCACACAC ATCCGCCACC AATTTTTGGT GCCCCACCCA GCTACCCAAC ACCACCAACA CCAATTTATA GTCCACCCAT ATATCCACCA CCAATACAAA AGCCTCCGAC ACCAACTTAC AGTCCTCCCA TATATCCACC ACCAATACAA AAGCCTCCGA CACCAAGTTA TAGTCCTCCT GTTAAACCAC CACCAGTTCA CAAGCCTCCG ACACCAACTT ACAGTCCCCC TATAAAACCA CCACCAGTGC ATAAGCCTCC GACACCAATT TATAGTCCTC CGATCAAGCC ACCACCGGTG CACAAGCCTC CAACACCAAC TTACAGTCCT CCGGTCAAGC CACCGCCGGT GCACAAGCCT CCGACACCAA CTTACAGTCC CCCTATAAAA CCACCACCAG TGCATAAGCC TCCGACACCG ATTTACAGTC CTCCGATCAA GCCACCACCA GTGCACAAGC CACCAACACC AACTTACAGT CCTCCGGTCA AGCCACCGCC GGTGCACAAG CCTCCGACAC CAACTTACAT CCATAAACCT CCGGCACCAA CTTATAGTCC TCCTATCAAG CCACCACCAG TTCAGAAACC TCCCACACCA ATTTACAGTC CACCAATTAA ACCCCCACCA GTGAAGCCTC CGACACCAAC TTACAGTCCA CCTATCAAGC CACCGCCAGT TCAAAAGCCT CCCACACCAA CGTACAGTCC CCCAATAAAG CCACCACCAG TGCAAAAGCC TCCGACACCA ATTTATAGTC CACCCGTTAA GCCACCACCA GTGCAAAAGC CTCCGACACC AATTTATAGT CCACCCGTTA AGCCACCACC AGTGCACAAG CCTCCGACAC CAACTTATAG TCCACCAATT AAACCACCAC CTGTGAAGCC TCCAACACCA ACATATAGTC CACCTGTTAA GCCACCACCA ATACATAAGC CTCCGACACC TACTTATAGT CCTCCTATTA AGCCACCACC AGTGCAGAAG CCTCCTACAC CAATTTACAG TCCTCCAATC AAGCCACCAC CGGTGCACAA GCCTCCTACA CCAACTTACA GTCCCCCTAT AAAACCACCA CCTGTACATA AGCCTCCGAC ACCGATTTAC AGTCCTCCGA TCAAGCCACC ACCGGTGCAC AAGCCTCCGA CACCAACTTA TAGTCCTCCT GTTAAACCAC CACCTGTACA TAAGCCTCCG ACACCTACTT ACAGTCCCCC TATCAAGCCA CCACCAGTCC AAAAGCCTCC CACACCTACG TATAGTCCCC CTATAAAGCC ACCACCAGTC CAAAAGCCTC CAACACCAAC TTACAGTCCA CCTGTCAAGC CACCACCAGT GCAAAAACCT CCAACACCAA CTTATAGTCC TCCTATAAAA CCACCACCAG TACAAGTACC TCCAACACCA ACTACTCCAT CACCTCCACA AGGTGGATAT GGTACTCCTC CTCCATATGC ATATTTATTG CATCCTATAG ACATAAGCAA TTAG
Length1614
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT2G27380.1
Descriptionextensin proline-rich 1
TAIR curator summaryEncodes an extensin like gene involved in seed germination.
Alias[ATEPR1][EPR1][extensin proline-rich 1]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg931786 proline-rich extensin-like family protein
6 Ahg916456 proline-rich extensin-like family protein
8.66025 Ahg347223 Proline-rich extensin-like family protein
10.7703 Ahg905690
10.9545 Ahg341841 transposable element gene
11.8322 Ahg323992 hydroxyproline-rich glycoprotein
15.4272 Ahg314403 C2H2 type zinc finger transcription factor family
17.9444 Ahg940106 proline-rich extensin-like family protein
19.6723 Ahg475609 photosystem II reaction center protein H
19.6723 Ahg475557 photosystem II reaction center protein H
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression