| Annotation |
|---|
| Description | jgi|Araly1|350245|fgenesh1_pg.C_scaffold_6000838 |
| Sequence |
ATGGAGTTTA ATAACAGAAA GACGCTCTTT TGTTATCTAC CGATCAAAGA TTTTAAGTCG CCGATCTTCA TCCCTTGTTT CCAGACTTCC CCTCCGCCAC CACCACCACC GCCACAGAGC AAGCTCTCTC TCCTACTCCC CACCTATATC TGCGTCGTCG GCTCAGTCAT ACTCTTTCTC TTTCTAGTCG TCTTCCTCTA CCTCTACATA ACGCAACCAC GGCGGAACTC AGCCGCTACC GTAACTCCCG GTGACACAAG CCAACGGGAA AACGAAGACG AAACAGAGGA GAGAGATCAC TCCGACTTCC ATCACGTCTG GCGAATCCCA ACCGTCGGTC TCCATCGTTC CGCCATCAAC TCGATCACAG TTGTTGGATT CAAAAAGGGA GAAGGGATCA TCGACGGCAC AGAATGCTCT GTCTGCTTAA ACGAGTTTGA AGAAGACGAA TCACTGAGAT TGTTACCAAA GTGTAGTCAC GCCTTTCACA TTAACTGCAT TGACACTTGG TTGCTCTCTC ACAAGAACTG TCCTTTATGT CGTGCCCCTG TTCTTCTTCT CACTGAGCCT CCTCATCAAG AAACAGAGAC GAATCATCAA CCAGATTCTG AATCGAGCAA TGACCTCAGT GGAGGAGGAC AAGAGAGTTC TAGATCCAGA AGAAACCATA ATATTATTCT TCCAAGGGCA CAAAGCGATT TGGCAAACCA TTGTGGCTCG GGAAGAGTGG AAAATGTGAG AAGATCGTCA TCAATTGGAG GAAGCTTATC ACTTTGCGAT GGTAATTACA ATGCTACTAG AAGTGGAAGA CAGTTCTATA CCAGTTTCAG TGCTAACTTC TTCTCATCAT CAAGAAGATT AAGGAGCCAA GATCCGATTC TACCAAACCG TACACCATCT GTATCTGGTA ATTTCAGTTA A |
| Length | 921 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 3982670.. 3983593 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G10380.1 |
| Description | RING/U-box superfamily protein |
| TAIR curator summary | Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. |
| Alias | [ATRING1][RING1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.74166 |
Ahg346169 | chitinase, putative |
| 7.93725 |
Ahg488726 | Curculin-like (mannose-binding) lectin family protein |
| 9.38083 |
Ahg939077 | Phosphoglycerate mutase family protein |
| 9.43398 |
Ahg900074 | Protein of Unknown Function (DUF239) |
| 11.5326 |
Ahg921441 | |
| 12 |
Ahg480590 | NAC domain containing protein 36 |
| 12.8452 |
Ahg934970 | Calcium-binding EF-hand family protein |
| 14.8324 |
Ahg493466 | XB3 ortholog 4 in Arabidopsis thaliana |
| 20.347 |
Ahg895387 | Protein kinase superfamily protein |
| 20.7846 |
Ahg919589 | calreticulin 3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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