Detail



ID : Ahg353119

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|353119|fgenesh1_pg.C_scaffold_7000292
Sequence
ATGGGAGATA AGAAATTGAT TTCTTCTTCT TCTTCCTCGG TTTACGATAC TACTCGTATC AATCATCATC ATCATCCTCC GTCTTCTTCC GACGAAATCT CTCAGTTTCT CCGGCATATT TTCGACCGTT CTTCTCCTTT ACCTTCTTAC TATTCTCCGG CGACGACGAC GACAACGACT TCAATGATTG GTGTGCAAGT TCACGGTGAC CCACATGCAG ATAACTCGAC AAGTCTCGTT TCTCATCATC CACCGTCGGA TTCTGTGCTC ATGTCGAAAC GTGTCGGAGA TTTCTCTGAG GTTTTAATCG GCGGAGGCGC GTGTTTTGGT TTCTCCGGTG GTGGTAATAA TAATAACGCT CAGGGAAATA GCTCTGGGAC TCGAGTATCG TCTTCTTCTG TTGGAGCTAG TGGAAACGAG ACCGATGAGT ATGACTGCGA AAGCGAGGAA GGAGGAGAAG CTGTAGTTGA TGAAGCTCCC TCTTCCAAGT CAGGTCCTTC TTCTCGTAGT TCATCTAAGA GATGCAGAGC TGCTGAAGTT CATAATCTCT CTGAGAAGAG GAGGAGAAGT AGAATCAATG AAAAAATGAA AGCTTTGCAG AGTCTCATCC CTAATTCAAA TAAGACGGAT AAGGCTTCAA TGCTTGATGA AGCCATTGAA TATCTGAAAC AGCTTCAGCT CCAAGTTCAG ATGTTGACAA TGAGAAATGG GATAAACTTA CATCATCCTT TGTGCTTACC TGGAACTACA TTACATCCAT TGCAACTCTC TCAGATTCGA CCCCCAGAAG CAACCAATGA TCCTCTGCTC AATCATACCA ATCAGTTTGC TTCGACTTCT AATGCACCGG AAATGATCAA TACCGTGGCT TCTTCATACG CATTGGAACC TTCCATTCGC AGTCACTTTG GACCTTTCCC TCCTCTCCTT AATTCACCCG CGGAGATGAG TCGGGAAGGA GGGTTAACTC ATCAAAGGTT GAACATTGGT CATTCCAACG CAAACTTAAC CGGGGAACAA GCTCTGTTTG ATGGACAACC TGACCTAAAA GATCGAATTA CTTGA 
Length1065
Protein Sequence
Protein Residue
Map Locationscaffold_7: 1385912.. 1387585
Download Sequence
A.thaliana
AGI-codeAT4G36930.1
Descriptionbasic helix-loop-helix (bHLH) DNA-binding superfamily protein
TAIR curator summaryEncodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
Alias[SPT][SPATULA]
Gene coexpression
MR
MR Locus Description
22.561 Ahg311334 NAC domain containing protein 48
22.9347 Ahg495070 NAD(P)-binding Rossmann-fold superfamily protein
44.8107 Ahg942704
44.8999 Ahg488737
47.6865 Ahg894498 alpha/beta-Hydrolases superfamily protein
54.7449 Ahg890380 purine permease 8
56.285 Ahg483781 cytokinin response factor 5
58.6345 Ahg906165
59.7662 Ahg354960 transferases, transferring acyl groups
60.3324 Ahg343893
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression