| Annotation |
|---|
| Description | jgi|Araly1|470915|fgenesh2_kg.1__869__AT1G08540.1 |
| Sequence |
CTCTTCTTCG TCTTCATCCG CCATCATCAC CAGTTTCTCT CTCTCTCTAC AAATCTTCTT TAACGGCCCT TGAATCAATC AATGGTCAGC AGACTTAGCT TTCGAATATA GGCTAAGAAC GAGCATGTCT TCTTGTCTTC TTCCTCAGTT CAAGTGCCCA CCTGATTCTT TCTCTATTCA CTTCCGAACC TCTTTCTGCG CCCCAAAACA CAATAAGGGT TCACTCTTCT TCCAACCGCA ATGTGCAGTA TCCACTTCAC CGGCTTTATT AACTTCTATG CTTGATGTGG CAAAGCTTAG ACTACCCTCT TTCGATACTG ATTCAGATTC CCGAATATCA GACAGGCAAT GGACTTATAC AAGGGCTGAT GGTCCTTCCA CTGAGGCAAA ATATTTAGAA GCTTTAGCCT CTGAGACACT TCTGACAAGT GATGAAGCCG TAGTTGCAGC TGCAGCAGCT GAAGCAGTCG CCCTTGCAAG AGCTGCTGTC AAAGTTGCGA AAGATGCAAC ATTATTTAAG AACAGTAACA ACACAAACCT ATTAATTTCA TCAATTGCCG ACAAACGCTC TAAGTGGGAC CAGTTTACTG AGAAGGAACG TGCTGGCATA TTGGGACATC TCGCGGTTTC GGACAATGGA ATCGTGAGTG ATAAAATCAC TGCACCTGCC TCTAACAAAG AGTCGCCTGG TGATTTAGAA TCAGAAAAAC AAGAAGAAGC TGAGCTTCTG GAGGAGCAAC CTTCAGTGAG TTTAGCTGTG AGATCTACAC GCCAAACTGA AAGGAAAGCT CGGAGGGCAA AAGGGTTAGA GAAAACTGCA TCAGGTATTC CGTCTGTGAA GACTGGTTCG AGCCCTAGAA AGAAACGTCT TGTTGCGCAA GAAGTTGACC ATAATGATCC TTTGCGTTAT CTAAGAATGA CAACAAGCAG TTCCAAGCTT CTCACTGTCA GAGAAGAACA TGAGCTGTCG GCAGGAATAC AGGACCTTCT GAAGTTAGAA AGACTTCAAA CAGAGCTTAC AGAGCGTTGT GGACGTCAGC CAACCTTTGC GCAGTGGGCT TCTGCTGCTG GAGTCGATCA AAAATCATTA AGGAAACGTA TACATCATGG CACACTATGC AAAGACAAAA TGATTAAAAG CAACATTCGA CTCGTTATTT CGATTGCAAA GAATTATCAA GGAGCTGGGA TGAACCTCCA AGATCTTGTC CAGGAAGGGT GCAGAGGGCT TGTGAGGGGA GCAGAGAAGT TTGATGCTAC AAAGGGTTTT AAATTTTCAA CTTACGCTCA TTGGTGGATC AAGCAAGCTG TGCGGAAATC TCTTTCTGAT CAGTCCAGAA TGATAAGATT GCCTTTTCAT ATGGTGGAAG CAACATATCG GGTGAAAGAG GCACGGAAGC AACTGTACAG TGAAACAGGT AAGCACCCAA AGAACGAAGA AATTGCAGAG GCAACAGGGC TATCGATGAA GAGGCTCATG GCGGTTCTAC TCTCTCCTAA ACCACCGAGG TCGCTAGACC AGAAAATAGG AATGAATCAA AACCTCAAAC CTTCGGAAGT GATAGCAGAT CCAGAAGCAG TAACCTCAGA AGATATATTG ATAAAGGAAT TCATGAGGCA GGACTTGGAC AAAGTGTTGG ACTCGTTAGG TACGAGGGAG AAGCAAGTGA TACGTTGGAG ATTTGGGATG GAGGATGGGA GGATGAAGAC GTTGCAAGAG ATAGGAGAGA TGATGGGAGT GAGCAGGGAG AGAGTGAGGC AGATAGAGTC GTCTGCATTC AGGAAACTAA AGAACAAGAA GAGAAGCAAC CATTTGCAGC AATACTTGGT TGCACAATCA TAATTATTTT TTCTTTCAAA ATGGAATGTT TTGTGCATAG AACCCACCCA CCCGAGCATA ACAAGCAGTA AATTATTATT TTTTACTAAA TCGTAAAAAT TATT |
| Length | 1944 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 3057143.. 3060573 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G08540.1 |
| Description | RNApolymerase sigma subunit 2 |
| TAIR curator summary | Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. |
| Alias | [ABC1][ATSIG1][ATSIG2][SIG1][SIG2][SIGA][SIGB][SIGMA FACTOR 1][SIGMA FACTOR 2][RNA POLYMERASE SIGMA SUBUNIT 1][RNApolymerase sigma subunit 2][SIGMA FACTOR B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.9087 |
Ahg898931 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| 18.868 |
Ahg481233 | other RNA |
| 27.9285 |
Ahg946135 | RAB GTPase homolog E1B |
| 30.2655 |
Ahg922337 | Single hybrid motif superfamily protein |
| 34.5977 |
Ahg478401 | non-intrinsic ABC protein 7 |
| 42.0714 |
Ahg946346 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 46.4327 |
Ahg493621 | glutamine synthetase 2 |
| 47.1169 |
Ahg471331 | Glycine cleavage T-protein family |
| 50.7346 |
Ahg485130 | DnaJ/Hsp40 cysteine-rich domain superfamily protein |
| 54.626 |
Ahg484499 | Ribosomal protein S21 family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|