| Annotation |
|---|
| Description | jgi|Araly1|471048|fgenesh2_kg.1__1002__AT1G09530.2 |
| Sequence |
TCCGTCTTGT GCGTCGATTT GTCTCCATCT CCCTCTCTCC GCCTACTTTC TCAAGATTAC TCCAATTCGC CGTCTTCTTC TCCTCTGTTC TCTGCATTTG GATTGATGTC ATTTTAGTAC TCTCTTTCTC TCTCTCTTCG CCGACTTCGA TTTCTTCAGT TTTCTGCTAC CCTTTTTCTC AGGTCAGCTA CGAAGATCAA GATTGTCTCT GTAAAACGCA ACACCATGCC TCTGTTTGAG CTTTTCAGGC TCACCCAAGC TAACCTCGAA TCTGCTCAAG ACAACAACCC TTCTCCACCT GTAGATGAAG TTGTGGAACT AGTGTGGGAA AACGGTCAGA TTTCAACTCA GAGTCAGTCA AGCAGGTCGA GGAACATTCC TCCACCACAA GCAAACTCTT CTAGGGCTAG AGAGATTGGG AATGGCTCAA AGGCAACGAT GGTGGATGAG ATCCCTATGT CAGTGCCATC ACTAATGACG GGTTTGAGTC AAGACGATGA CTTTGTTCCA TGGTTGAATC ATCATCCATC CCTCGATGGA TATTGTTCTG ATTTCTTGCG TGATGTGTCT CCTGTTACTG TCAACGAGCA AGAGAGCGAT ATGGCGGTAA ATCAAACTGT TTTCCCGTTG TTTCAGAGAA GAAACAATGG CAATGAGTCA GCTTCTGCTG CTTCTTCATC GCAGTATAAC GGTTTTCAAT CTCAATCTGT GTATGGAAGT GATAGAGCTA GGGATCCTGC TAGCCTACAA GCCAAACCGG ATCAATTTAC TCAGACGCAG GAACCACTAA TCCTTAGTAA CAAGCCCAGT TTGGTCAACT TTTCGCATTT CTTACGCCCT GCAACTTTGG CTAAGACTAA TAACCCTCAT GGCAGTAAAG AGAAGAGTCC TCAAAGCCCG CCGAATGTGT TTCAGACCAG AGTTCTTGGA GCTAAGGACT CTGAAGATAA GGTTCTTAAC GAGTCTGTTG CTTCTGCTAT GCCTAAGGAT AACCAAAAGG CTTGCCTTAT TACAGAGGAC TCATGTAGAA AAGACCAAGA GAGTGAAAAG GCAGTTGTGT GTTCTTCTGT TGGCTCGGGT AATAGTCTTG ATGGCCCATC CGAAAGTCCT TCACTTTCTT TAAAGAGAAA GCGTTCGGAT ATTCAAGACA TTGACTGTCG TCATAGTGAA GATGTTGAAG AAGAATCAGG AGATGGAAGA AAGGAAGCAG GTCCTTCTCG AACGGGTTTG GGTTCAAAGA GAAGCCGCTC TGCAGAAGTG CATAATCTGT CTGAAAGGAG ACGGCGTGAT AGGATCAACG AGAAGATGCG TGCCCTGCAA GAACTCATTC CAAACTGCAA CAAGGTGGAC AAAGCTTCGA TGCTAGATGA AGCCATCGAG TATCTCAAGT CCCTCCAACT TCAAGTACAG ATTATGTCGA TGGCGTCTGG TTACTACATG CCACCGGTTA TGTTCCCACA TGGTATGGGG CACTACCCGG CTGCAATGGC AATAGGCATG GGAATGCCTT ATGCAATGGG CTTGCCTGAT TTAAGCCGGG GTGGATCATC GGTTAACCAC GGACCACAGT TCCAAGTCTC GGGGTTGCAA CAACCAGTGG CGATGGCGAT TCCACGTGTC TCTGGTGGTG GTTTCTTTGC AGAGTCTTCA ACGATGGAGA TGAATAAGAG CGACAATGGT TCGACTAGAG ATTTATCGGG TTCTAAAGAT CAAACAACGA CGAATAACAA CAGTAACTTG AAACCAATAA AGAGAAAACA TGCGTCTTCT GATCAGTTTT GTGGATCGTC ATGACATAAA TACAAACTGA AGAACTGATG TATTGTTTAT CTTGTAGCAT TCAAACAAAT CAATTAAAAT TAATTTGTGT TCTTTATAAC AG |
| Length | 1882 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 3453186.. 3456055 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G09530.1 |
| Description | phytochrome interacting factor 3 |
| TAIR curator summary | Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes. |
| Alias | [PAP3][PIF3][POC1][PHYTOCHROME-ASSOCIATED PROTEIN 3][phytochrome interacting factor 3][PHOTOCURRENT 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 26.5141 |
Ahg485847 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein |
| 30.1993 |
Ahg491161 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| 35.2136 |
Ahg951074 | |
| 39.6989 |
Ahg473134 | transcriptional regulator family protein |
| 72.8903 |
Ahg473738 | |
| 76.6942 |
Ahg485234 | Sterile alpha motif (SAM) domain-containing protein |
| 83.863 |
Ahg922252 | Amino acid permease family protein |
| 89.4874 |
Ahg492141 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 93.2416 |
Ahg476510 | MATE efflux family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|