Detail



ID : Ahg471159

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|471159|fgenesh2_kg.1__1113__AT1G10450.1
Sequence
ATGATAGATC TATTACTGGG GACAACGATT ACGAGCTATT TCTCTGGGCT TGGACTATTT CAAGGTTCTT AGTTCAGAAA TCAGTCTGCG GGAGAAAGAG GAAGACGAAG ATGAAGAGAG TTAGAGAAGA TGTTCACACT GAACCTAATA AGCGAAGGCC TGAAGTTTCG TCTCGAGGAG AAACAAACAA GCAACCTCGA ACCGTCGATG CCCTAACGTA TCTCAAAGCT GTTAAGGACA TTTTTCAAGA CAATAAAGAG AAATATGAGT CTTTCCTTGA GCTCATGAAG GAGTTTAAAG CTCATACAAT CGACACTGAT GGTGTCATTG AAAGAATTAA AGTATTGTTC AAGGGTTATA AGGACCTACT TTTAGGTTTT AATACTTTCT TGCCCAAAGG CTATAGAATA ACCCTTCTGC CGGAGGAAGA GAAGCCTAAG GTCCGGGTGG ATTTCAAAGA CGCTATCGGT TTCGTCACCA AGATTAAGAC GAGGTTCGGA GATGATGAAC ATGCGTATAA AAGGTTTCTA GACATCTTGA ACATGTATAG AAAGGAAAGA AAGTCCATCT CTGAGGTCTA CGAAGAGGTT ACTATGTTAT TCAAGGGTCA TGAAGATCTG CTCATGGAGT TCGTTAATTT CTTACCTAAC TGTCCAGAAT CAGCTCCCTC GGCAAATAAT GCAGTGCCGC GTCACAAGGG CACTGCAATT ACTGCCATGC ATTCTGATAA GAAAAGAAAA CAACGACGTA AGCTTGAGGA TTATTCTGGA CACTCTGATC AACGAGAAGA TGGTGATGAG AATCTTGTCG CTTGCTCCGC TGACTCCCCT GTTGGAGAAG GTCAGCCAGG ATACTTTCGA GATTATGAAA ATAGAGAAGA TACTGAAACA GATACAGCAG ATAGAACTGA AAAAAGTGCA GCATCTGGCA GTCAAGATAT CGGAAATCAC AAATCGACTA CCAAGTATGT GGGAACACCT ATAAATGAGC TTGATCTTTC TGAGTGCACT CAGTGTACCC CAAGTTATCG ACTCCTGCCA AAGGATTATG CAGTTGAGAT CCCAAGCTAC AGAAATACAC TTGGTAAAAA GACACTCAAT GACCACCTGG TATCTGTCAC CTCAGGGAGT GAAGATTACT CATTCAGTCA TATGCGCAAA AACCAGTATG AAGAAAGCTT GTTTCGGTGT GAGGATGACA GGTATGAAAT GGACATGTTA CTAGGATCTG TAAGTTCAGC CATTAAACAC GTGGAAATTC TTCTCGAGAA GATGAACAAC AATACTATCT CAGTAGACTC TACTATATGT ATCGAAAAAC ACTTATCAGC TATAAACTTG AGATGCATTG AGCGGTTATA CGGTGATAAT GGGCTTGATG TCATGGATCT TTTGAAGAAG AATATGCATA GCGCTTTACC GGTGATACTA ACGCGCTTGA AGCAGAAGCA AGAAGAATGG GCAAGGTGCC ACTCTGATTT CCAGAAAGTT TGGGCTGAAG TATATGCTAA GAATCACCAT AAGTCACTAG ATCATCGTAG TTTCTATTTC AAGCAGCAGG ACTCTAAGAA CTTGAGCACA AAATGTTTAG TGGCAGAAGT AAAAGATATC AGTGAGAAAA AGCATCAAGA AGATCTGCTT CAAGCTATTT CTGTTAGAGT TATGCCCTCA TTTACTCCGG ATTTGGAGTT CAACTATTGT GATATACAAA TTCACGAGGA TCTCTATCTG CTAATCAAGT ATTACTGTGA AGAAATATGT GCCACTGAAC AATCAGATAA GGTGATGAAG CTGTGGATAA CCTTTTTAGA GCCCATGTTT GGCATTCTTT CGAGGTCTCA AGGTAACCAT GCTCTGGAAG ATGTGTCAAA GTTGAAAAAC AACCAAGAAT TGCAAGATGC ATGCGTGGCA GTGAAGGACA CAGCTTCTGG GTCAAACCTT AAACATCCAA TATCCCCGAA ACTACTGAAC AAAGATAATT CAACAATGCA AGGAAGTTCT CCTCGGAAAG ATGTCTCAGC GAATATAATG AAAACTGCTC AGCCCGATAA GCTGCAGGAT GATGCAGCTA TGACTAATGA GGTTATTCAG TCTTCCAAAC TTGTGTCACC CAGAAATGAT CAGATAATGG AGGATGAAGG GAATCATATG GTTAACGAAG CATCGGTGGA AAAGCATGAG GTTGAGCGAG AAGAGGGTGA ATTATCTCCC ACCCCCAGTC GTGAGCAAGG CAACTTTGAG GTTAATGGAC AGAATGGCTT CAAGCCTTTA CAAAAGGTGA CGGACAATGT AAGAAGCAAT AAAGACCAGC AAAGTTGTGA TATAAAGGGA GCAAAGAACG ATACTCGCGG TGAAGATGAC AAACAAGAAA ATTGTCACAA GTTATCAGAG GATAATGAGA CTGCCTCTGA AATGCTTGTT TCAGGAACCA AGTTTAGTTG TCATGAAGAG CACAACAGAG TTACGAACTG TAATGGGCGT GGTAGTGTTG CTGGAGAGAT GGCTAGTGGA AATGAAGGTG AAGATGGATC CTTTGCATTT TCAGAACGGT TTCTGCAAAC TGTAAAACCT GTTGCCAAGC ATCTGTCTTG GCCATTGCAA GCTAGTGAAA CTTGCTCCCA AAATGATTCT CAAGTTTTTT ACGGGAATGA TTCCTATTAT GTGCTATTTA GGCTTCATCA AATGTTGTAC GAGAGAATAC AAACAGCAAA GAAACATTCA GAAAAGAAGT GGAAGGCTCC AGATAACACA ACTCCTGATT CTTATCCCAG GTTCATGGAT GCACTCTATA ATTTACTTGA CGGTTCTATT GACAATACAA AGTTTGAAGA TGAGTGCCGA GCTATTTTTG GAGCACAGTC GTATGTTCTT TTCACATTGG ACAAGCTAGT TCAGAAGTTT GTTAAGCATC TCCATGCGGT TGCATCTGAT GAAACAGACA CCAAGCTTCT GCAACTACAT GCGTATGAGA ACTACAGAAA ACCAGGAAAA TTCTTTGATC TTGTGTATCA TGAGAATGCA TGTGCCCTCC TCCATGAGGC AAACATATAC CGGATCAGAT ATTCATCAGC AGAAACACGT CTCTCGATTC AGCTTATGAA CAGCGGGAAC AATCAGCCTG AAGTAATGGG TGTAGCGATG GAGCCAGGTT TTGCAGATTA TCTACAAAAG AAATTTCTGA AATCCGTCAA TGATGAAGAG AATCACGGAC TGTTTCTGAA AAGGAACAAG AAGAAATTCA CCAGCTTAGA TGAATCTCGG GGGATGCCCG TTGCGATGGA AGGATTGCAT ATTATCAACG AGATGGAATG TAATATGGCT TGCAGTTCTT CAAAGGTGAA GTATGTAGCA AATACATCAG ATGTTTTGTA TAGGAGCAAA CAGGGGAAAC CGAATTTAAG AGTCGGTGAA ATCTTGAAAC AGAGAAGGAT ATCGCGGTTT CACATAATGC TGAATTGCAG ACTTTGTGCC TTGCCTCCTC TATAAACTGG TGTTAGTGTC GAGGTTCTTA ATGGTAAAGG CTCGTTGGCT CTTAGAGATT ATGCAAAAGA AGTTTACTCG TTTTTAACGT GACATGGACT GGGATCATAT GGCTCATGGT TAACTACGCG GCTACTCCAC ATTTTTTGTT TGTTTTTCTT TTTTGCGTTT TGCGTTCGGA GTCTTCGGTT TTGGTATATA GTTGTAGACT TGTAGTAGAA TATATGATAC GAAAGTTGCC AAAATCGAAA GACT 
Length3734
Protein Sequence
Protein Residue
Map Locationscaffold_1: 3880808.. 3887106
Download Sequence
A.thaliana
AGI-codeAT1G10450.1
DescriptionSIN3-like 6
TAIR curator summaryEncodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).
Alias[SNL6][SIN3-like 6]
Gene coexpression
MR
MR Locus Description
2.64575 Ahg940610 DNAse I-like superfamily protein
3.60555 Ahg949816 dentin sialophosphoprotein-related
6.9282 Ahg491404
9.94987 Ahg323092 aldehyde oxidase 2
11.4891 Ahg950423 Galactose oxidase/kelch repeat superfamily protein
12.0416 Ahg495958 HEAT/U-box domain-containing protein
15.6205 Ahg491165 xanthine dehydrogenase 1
15.748 Ahg492906 Cyclin family protein
20.3961 Ahg475506
20.7846 Ahg475503 GPCR-type G protein 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression