Detail



ID : Ahg472378

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|472378|fgenesh2_kg.1__2332__AT1G21410.1
Sequence
GATCAAGAAC ACCGCTTCAT TTTAGTCATT AAACAAAGAT GGTGATGGGA GGAGAAGCAT CCATGGAGCT GGACCATTGC TTTCAGAAGA TGAAGATGGA AGGAATCTCG ATCAAAGAGT GGAGAGATAT CCCTGTGGAG CTTCTGATGA GGATCCTTTC CCTTGTTGAT GATCGTAATG TCATTGTTGC TTCTGGTGTT TGCTGTGGCT GGAGAGATGC TATCTCTTTT GGCCTCACTC GTCTCCGTCT CTCTTGGTGC AACAGCAACA TGAACAGCTT GGTTCTTTCT CTTGTTCCCA AGTTTGTGAA GCTGCAGACT TTAATACTGC GGCAGGACAA ACCACAACTT GAGGACAATG CAGTGGAGGC CATAGCAAAT CACTGCCATG AGTTACAAGA ACTTGATCTC AGCAAAAGCT TGAAAATTAC AGATCGTTCA CTTTATGCAC TTGCTCATGG TTGCCCTGAC CTCACAAAAC TCAACCTTAG TGGCTGCACT TCATTCAGTG ACACTGCTAT TGCGTATTTG ACCAGATTCT GCAGAAAGCT TAAAGTTTTG AATCTTTGCG GATGTGTCAA AGCTGTAACT GACAATGCCT TGGAGGTGAA TATTGGGAAT AACTGCAATC AGATGCAGTC ACTAAACTTG GGATGGTGTG AGAATATCAG TGATGATGGG GTAATGAATT TAGCTTATGG CTGTCCAGAT CTCAGGACCC TTGACCTCTG TGGCTGTGTT CTAATTACAG ATGAGAGTGT GGTAGCTCTA GCGGATTGGT GTGTCCACTT GAGGTCACTG GGGTTATACT ATTGCAGAAA CATAACAGAC AGGGCAATGT ACTCGTTAGC TCAAAGCGGG GTAAAGAACA AACCGGGTTC ATGGAAATCA GTAAAGAAAG GCAAATACGA TGAAGAAGGA CTGAGAAGTC TCAACATTAG CCAATGCACT GCCCTCACAC CTTCAGCGGT TCAAGCTGTT TGCGATTCCT TTCCCGCGCT TCACACATGT TCAGGAAGGC ATTCGCTTGT CATGAGCGGT TGTCTGAACT TAACAACTGT CCACTGTGCT TGTATCCTTC AGGCTCATCG TGCGCACAAT GCGGTTCCTC ATCCGGCTCA TTGAAACAGA GGAATAGATA TGTTGTATAT ATAAGCATCA TGTTGATGGA GATTAGTATT ATAAACGAAG TAGCTTTTTG AAGGTGTATG TGAAACCTTA GAAGCTTTTG AGTTGTTCTT TCTTTGCCTT GAAAGATCTT TTGTATATTT TGGTGCTATG TTTATGACTT TTTTTTTGTA AGACCTCTCT TTGTTACC 
Length1318
Protein Sequence
Protein Residue
Map Locationscaffold_1: 8801000.. 8803024
Download Sequence
A.thaliana
AGI-codeAT1G21410.1
DescriptionF-box/RNI-like superfamily protein
TAIR curator summaryAtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.
Alias[SKP2A]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg476529 alpha/beta-Hydrolases superfamily protein
4.69042 Ahg926720 alpha/beta-Hydrolases superfamily protein
5.47723 Ahg479517
11.8322 Ahg322009 inositol transporter 1
12.3288 Ahg479444 ABRE binding factor 4
14.8324 Ahg926642 homology to ABI1
16 Ahg491942 Protein of unknown function (DUF1421)
18 Ahg479030
20.1742 Ahg496010 FTSH protease 9
21.3307 Ahg487941 serine-rich protein-related
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression