| Annotation |
|---|
| Description | jgi|Araly1|474478|fgenesh2_kg.1__4432__AT1G53500.1 |
| Sequence |
GAGTTTAATG TCGGACGCTA GACTCACGAG AAATCCGTAA TATCTAAGAG AAGAAAGGGT AAATTAGTCA ATTGGCTCCT ACGGTTCTCC GTAACTGTCT CAGAATATAA GAGGCGCATT GTTGAGAGAA GCTCCGTAGA CCGTAGATTC CCTCTTCTTC TTCTTCTTCT TCTTCCTCTC TACTGTTTTT TCTTTTCATA TTTCTCTCTC TATTCTTGGT GAAGTTTCTC TCTCTAAGTA CTCTCTTACG ATCTTCTTCT CTCTTGGGTT ATCTGATTCT AACCTGAATT GTGTCGGTAC AAATGGATGA TACTACTACG TATAAGCCAA AGAACATTCT CATTACTGGA GCTGCTGGAT TCATTGCTTC TCATGTTGCC AACAGATTAA TCCGTAGCTA TCCTGATTAC AAGATCGTTG TGTTGGACAA GCTTGATTAC TGTTCAGATC TGAAGAATCT TGATCCTTCA TTTTCTTCAC CAAACTTCAA GTTTGTCAAA GGAGATATCG CTAGTGATGA TCTCGTTAAC TACCTTCTCA TTACTGAAAA CATTGATACG ATAATGCATT TTGCTGCTCA AACTCATGTT GATAACTCTT TTGGTAATAG CTTTGAGTTT ACCAAGAACA ATATCTATGG TACTCATGTT CTTTTGGAAG CCTGTAAAGT TACAGGACAG ATCAGGAGGT TTATCCATGT GAGTACCGAT GAAGTCTATG GAGAAACCGA TGAGGATGCT GCTGTAGGAA ACCATGAAGC TTCACAGCTC TTACCCACGA ATCCCTACTC TGCCACTAAG GCTGGTGCTG AGATGCTTGT GATGGCTTAT GGTAGATCAT ATGGATTGCC TGTTATTACC ACTCGCGGGA ACAATGTTTA TGGGCCTAAC CAGTTTCCTG AGAAAATGAT TCCTAAGTTC ATCTTGTTGG CTATGAGTGG GAAGCCGCTT CCCATCCATG GAGATGGATC TAATGTCCGG AGTTACTTGT ACTGTGAAGA CGTTGCTGAG GCTTTTGAGG TTGTTCTTCA CAAAGGAGAA ATCGGCCATG TCTACAATAT CGGTACAAAG AGAGAAAGGA GAGTGATCGA TGTGGCTAGA GACATCTGCA AACTTTTCGG GAAAGACCCT GAGTCAAGCA TTCAGTTTGT TGAGAACCGA CCCTTTAATG ATCAAAGGTA CTTCCTTGAT GATCAGAAGC TGAAGAAATT GGGATGGCAA GAGCGAACAA CATGGGAAGA TGGACTGAAG AAGACAATGG ACTGGTACAC TCAGAATCCT GAGTGGTGGG GTGATGTTTC TGGAGCTTTG CTTCCTCATC CAAGAATGCT TATGATGCCC GGTGGAAGAC TTTCTGATGG ATCTAGTGAG AAGAAAGACG CTGCAAGCAA CACGGTCCAG ACATTTACGG TTGTAACACC TAAGGGTGGT GGTTCTGGTG ACAAAGCTTC GTTGAAGTTT TTGATCTATG GTAAGACCGG TTGGCTTGGT GGTCTTCTAG GGAAACTATG TGAGAAGCAA GGGATTACAT ATGAGTATGG GAAAGGACGT TTGGAGGATA GAGCTTCTCT TGTGGCGGAT ATTCGTAGCA TCAAACCTAC TCATGTCTTT AATGCTGCTG GTTTAACTGG CAGACCCAAC GTTGACTGGT GTGAATCTCA CAAACCAGAG ACCATTCGCG TAAATGTCGC TGGTACTTTG ACTCTAGCTG ATGTTTGCAG AGAGAATGAT CTCTTGATGA TGAACTTTGC CACCGGTTGC ATCTTTGAGT ATGATGCTGC ACATCCTGAG GGTTCGGGTA TAGGTTTCAA GGAAGAAGAC AAGCCAAATT TCTTTGGTTC TTTCTACTCG AAAACCAAAG CCATGGTTGA GGAGCTCTTG AGAGAATATG ACAATGTATG TACCTTGAGA GTCCGGATGC CAATCTCCTC AGACCTAAAC AACCCAAGAA ACTTCATCAC GAAGATCTCA CGCTACAACA AAGTGGTGGA CATCCCGAAC AGCATGACCA TACTGGACGA GCTTCTCCCG ATCTCCATCG AGATGGCGAA GAGAAACCTA AGAGGGATAT GGAACTTCAC CAACCCAGGG GTGGTGAGCC ACAACGAGAT ACTGGAGATG TACAAGAATT ACATCGAGCC AGGTTTTAAA TGGTCCAACT TTACATTGGA AGAACAAGCA AAGGTCATTG TTGCTGCGCG AAGCAACAAC GAAATGGATG GATCTAAACT AAGCAAGGAG TTCCCAGAGA TGCTACCCAT CAAAGAGTCA CTGATCAAAT ACGTCTTTGA ACCAAACAAG AGAACCTAAG CCTTCAATGA ACATCACACT CTTGCCACAA GTGCTTACTT TAAATTGTTT CTTTTACTTT TTTTTTTCTT TTTGCCTTTT CTTTCAACAG AAATATCTTT TTATATTTAC TCATCGTCTT ATGATCCTTG TAGGTAGTTT CACTATATTG ATTCTACTAA AATATGATTT ACCATTAATA TTTATATAGA CGAGAGTTTT TCTTTTTCTC |
| Length | 2520 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 27181537.. 27184346 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G53500.1 |
| Description | NAD-dependent epimerase/dehydratase family protein |
| TAIR curator summary | encodes a putative NDP-L-rhamnose synthase, an enzyme required for the synthesis of the pectin rhamnogalacturonan I, the major component of Arabidopsis mucilage. Gene is involved in seed coat mucilage cell development. Mutant analyses suggest that MUM4 is required for complete mucilage synthesis, cytoplasmic rearrangement and seed coat development. |
| Alias | [ATMUM4][ATRHM2][MUM4][RHM2][ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4][ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2][MUCILAGE-MODIFIED 4][RHAMNOSE BIOSYNTHESIS 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 13.7477 |
Ahg478800 | Dihydrolipoamide acetyltransferase, long form protein |
| 21.4942 |
Ahg479128 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 22 |
Ahg473817 | Adenine nucleotide alpha hydrolases-like superfamily protein |
| 22.4499 |
Ahg950184 | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 |
| 28.6705 |
Ahg482088 | Ribosomal protein S3 family protein |
| 30.4631 |
Ahg488496 | isopentenyl diphosphate isomerase 1 |
| 32.311 |
Ahg475250 | ATP-citrate lyase A-2 |
| 44.9444 |
Ahg948390 | Ribosomal L5P family protein |
| 45.111 |
Ahg480231 | cycloartenol synthase 1 |
| 45.6946 |
Ahg934997 | transcription factor IIB |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|