Detail



ID : Ahg477131

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|477131|fgenesh2_kg.2__2261__AT1G79590.2
Sequence
GTCAGCACGA CGATCGCGTT TCGATCATCA AACAATCACA AATCGCGGTG CATAGAATTT AAAGGGTCAA TGGCGTCTTC TTCGGATGCA TGGATGAGAG AGTACAATGA GGCTTTGAAA CTTTCTGAGG ATATTAATGG CATGATGTCT GAAAGGAATG CGTCAGGGTT AACCGGGCCT GATGCTCAAC GTCGTGCCTC TGCAATTCGA AGGAAGATCA CCATTTTGGG GACCCGATTA GACAGTTTAC AATCCCTTCT TGTGAAAGTT CCTGGGAAGC AGCATGTTTC GGAGAAAGAG ATGAATCGTC GCAAGGATAT GGTTGGGAAT TTGAGATCAA AAACAAATCA GGTGGCCTCT GCTTTGAATA TGTCAAACTT TGCAAACAGA GACAGCTTGC TTGGGCCAGA TATAAAGCCA GATGATGCGA TCAACAGAGT CTCGGGCATG GACAACCAAG GAATTGTTGG ATTTCAACGG CAAGTTATGA GAGAACAAGA CGAGGGACTT GAGAAGTTGG AGGAAACAGT TATGAGTACT AAACACATTG CTCTCGCTGT CAACGAGGAG CTCACTCTGC AGACAAGGCT AATTGATGAC TTAGATTACC AGGTGGATGT CACTGACTCT CGCTTACGGC GTGTGCAAAA GAGCCTTGCC GTGATGAACA AGAGCATGAA AAGTGGTTGC TCATGCATGT CGATGCTCTT GTCTGTGCTT GGAATCGTTG GTCTTGCTCT TGTGATTTGG CTGCTGGTTA AGTACCTGTA GTGCCAACAA GGCGGCAACT TGTGAAAGCT CATCCTGTTC TCTCAGCCTC TCCTCTGTGC TTAATGGTTG TTTTCTATTC CTTCTTTCGA TTGATTCTTC GTCTGTGAGG CAAAGAAGAA TACCACTGCT TGTAAGAAAC CTTAAGAAGT ACATAATCTG TATTACCTTC GTATTGTCCA CGAATTGTAA AGTAAGTTTG TCTATATATG GTATGGCTCC TACTTTCAAT TAAGAGAACT AGTGGCTAGG ACAATGCAGA GACATAATGG TCAAAACGAC AATCTATTTT TTTTGATCTC AGTCACATTT GAATCTGTAT GGTTAGCCAC TTAGCCTTTT AGCTATGTAG GCGCTGCTTC TGATGGGAGT ATTGACATTC ACCTCCTTTT GGGTGATTTC ATTGTTTGAT TCCGGATTTG AATATGCATT 
Length1200
Protein Sequence
Protein Residue
Map Locationscaffold_2: 17674087.. 17676347
Download Sequence
A.thaliana
AGI-codeAT1G79590.1
Descriptionsyntaxin of plants 52
TAIR curator summaryEncodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Alias[ATSYP52][SYP52][syntaxin of plants 52]
Gene coexpression
MR
MR Locus Description
3.87298 Ahg352843 Protein of unknown function (DUF300)
11.1803 Ahg496745 plant U-box 38
13.3417 Ahg916997 YELLOW STRIPE like 3
13.9284 Ahg922500 methyl esterase 14
16.9706 Ahg327454 root FNR 1
21.2132 Ahg480666
24 Ahg481811 Protein kinase superfamily protein
31.1288 Ahg946428 Polyketide cyclase/dehydrase and lipid transport superfamily protein
32.311 Ahg490140 allantoinase
33.3617 Ahg496503 MA3 domain-containing protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression