| Annotation |
|---|
| Description | jgi|Araly1|479734|fgenesh2_kg.3__2435__AT3G22200.1 |
| Sequence |
TAACCAATCT CAGCTCTGCT TCTCAAAAAA TCCAGGATTC TTCAGATTCT TCTCCTTTGA TCTTTCTTCG ATCCGGTGTA AGAGAAATGG TCGTTATCAA CAGCCTTCGA CGCTTGGCGC GTACCACTCA GGTTAATTTG CAGAGTAGGC ATGCCACTTG CATGTCTGGG AACTCTACTT CCAGGAGGAT CTTCACTACT GAGGCAGCAC CTGAGAAGCT AAACTCTGTT AGGTCTAAGG GGCATGATAT GCTTGCACCT TTTACTGCTG GCTGGCAGAG TGCTGATTTA GATCCCTTGG TCATCGCTAA GTCTGAGGGA TGTTATGTGT ATGATGCCAA TGGGAAAAAG TATCTTGATT CTCTTGCTGG TCTATGGTGT ACTGCCTTAG GAGGAAATGA GCCACGGCTT GTTTCTGCTG CTGTTGAGCA GTTGAACACC TTGCCGTTTT ATCACTCCTT TTGGAACCGT ACTACTAAAC CTTCACTGGA TCTTGCTAAG GATCTTTTAG AGATGTTCAC GGCCAACAAA ATGACCAAAG CATTTTTTAC AAGCGGTGGA TCAGATGCCA ACGATACCCA GGTCAAGCTG GTTTGGTATT ACAATAACGC ACTTGGAAGG CCTGAGAAGA AAAAATTTAT CGCGAGAAAT AAATCGTACC ATGGCTCCAC TCTAATATCA GCAAGTTTGT CCGGCCTTCC GCCGCTGCAC CATAATTTTG ATTTACCTGC ACCATTTGTG CTGCACACAG ATTGCCCTCA TTATTGGCGT TTTCATCTTC CAGGCGAAAC CGAAGAGGAG TTCTCCACCA GATTAGCCAA GAATTTAGAG GATCTAATCA TCAAAGAAGG ACCAGAAACT ATTGGTGCTT TTATAGCTGA ACCAGTCATG GGTGCTGGGG GTGTGATACC TCCACCTGCT ACTTACTTTG AAAAGGTCCA AGCTGTTGTT AAGAAGTATG ATATCTTGTT CATTGCTGAT GAGGTGATAT GTGCATTTGG AAGGCTCGGG ACAATGTTTG GCTGTGACAA ATACAACATT AAGCCAGATC TTGTGACCTT AGCTAAGGCA CTGTCTTCAG CATATATGCC GATTGGAGCC ATTCTTATGA GTCAAGAAGT GGCAGATGTC ATTTATTCTC AAAGCAACAA GCTAGGCATT TTCTCGCATG GATTTACTTA TTCTGGTCAT CCAGTTTCAT GTGCTGTAGC AATCGAAGCA TTAAAGATAT ACAAGGAGAG GAACATACCA GCGTATGTCG CCAAAGTTGC CCCAAGGTTT CAAGATGGAC TTAAAGCTTT TGCCTCTAGT AGTCCTATTA TTGGAGAGAT AAGAGGAACA GGTTTGATTC TCGGGACTGA GTTTGTAGAC AATAAATCCC CAAACGAACC ATTTCCACCA GAATGGGGTG TTGGCGCATA CTTTGGAGCC GAGTGCCAGA AGCGCGGGAT GTTAGTCCGT GTTGCAGGTG ATAGCATAAT GATGTCTCCA CCGCTCATTA TCTCACCTGA AGAGATCGAT GAGTTGATTT CTATCTATGG GAAAGCATTG AAGGCAACGG AAGAGAAAGT AAAAGAACTC AAGACTCAGC ACAAGAAGTG AGAAGCAGAG TCCAAATGAT GTTGATGAAA ATGTTTTTTT TAGATTCTCA AAGTTTGGAT CTTTTGTTTT TAACACACAA GTCTTTTAAT AAGTGCATTT TAATGAGAAA TAAACAATAA TGGGACA |
| Length | 1727 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 9298364.. 9302207 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G22200.2 |
| Description | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| TAIR curator summary | Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense. |
| Alias | [GABA-T][HER1][POP2][GAMMA-AMINOBUTYRATE TRANSAMINASE][HEXENAL RESPONSE1][POLLEN-PISTIL INCOMPATIBILITY 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.48074 |
Ahg925800 | calmodulin 4 |
| 10.0995 |
Ahg358320 | leo1-like family protein |
| 11.8743 |
Ahg490342 | sucrose synthase 3 |
| 14.4222 |
Ahg482337 | Dormancy/auxin associated family protein |
| 16.7033 |
Ahg488325 | formate dehydrogenase |
| 16.7332 |
Ahg495982 | RAN binding protein 1 |
| 17.2047 |
Ahg482625 | Aldolase superfamily protein |
| 19.4165 |
Ahg324745 | Protein of unknown function (DUF581) |
| 19.4422 |
Ahg474077 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| 20.2731 |
Ahg474716 | dehydrin family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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