Detail



ID : Ahg479805

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|479805|fgenesh2_kg.3__2506__AT3G22970.1
Sequence
AAATAAACAA ATTATCACAA AAATACGTTT CTTGTATAAT AATTTTTTTT CCTCTCTAGA TTTGTCGCTT ACCTTTTGAA CTTCTCCGGC GATGAATCTC GCCGGGAAAA TGAATATTCC GGTTACTATT TCTGTTTCCG TTACTAGTAA CGCTGTCGAC TCTTACCATC GCCGTCACGT CTTCCGTGAA AAAAAACTCT GATCCTTCTC TTAGACTTTT TTTTTTTTAT TATTCTTTGC TTCGTTTTTG TGAAGATGAT CCGCTGATTT TCAGAAGTTT TCTTCTGGTT TTTAGCTGAG AGGTTTTGTT AGATTCTGTT TCTTCTTCTT CTTCTTCTTC TTCTCTGGTT TTTGAATCCA ATTTTGGAAA TTTTTGAAGA GTTTCTTTCG TTTTTGTTGG AGAGATCTGA GATTAGTGTA TATGAAATCA AATCTGTGTT TGAATTTGAA TTGACTTGGG GACTTGTGAA GAGAAGTTAG ATCGAGAGCT ATGCCATTTA CGATGAAGAT CCAACCGATT GATATCGATT CTTCTCCAGC TGTAGCTAGA GCTGAATCAG GCAACAAACC GGTGCTCAAA TCTCGTCTCA AACGTTTGTT TGATCGTCCG TTCACGAGAA ACGCAACAAC AACCACAGAG AAACCATTCG TCACCGGTGG TGAAGTTCAA TGTAGCGGCG GCGGCGGAGT AGTGACGGAG TTCGAACCAA GCTCTGTTTG CTTAGCGAAG ATGGTTCAGA ACTTCATAGA AGAAAACAAC GAGAAACAAG CTAAATGTGG ACGTAATCGT TGCAATTGCT TTAACGGCAA CAACGATAGC TACTCCGATG ATGAATCAGA TCTATTCGGT GGTTCAATCG ACGGTTGCGA CGCTTCTGAT CATCTCAAGA GTTTGGTTCC ATGCACAACC GTCGGCGAGA GGAATCTGTT AGCCGACGCG GCGAAGATTG TAGATAAGAA CAAATCGGTG AAACGAAAAG ACGATATGAA GAAGATCGTC AACGAAGGAC TCTTATCACT TAATTACAAT TCTTCAATCT GCAAATCTAA ATGGGATAAA TCTCCTTCGT TCCCAGCTGG TGAATATGAG TATATAGATG TGATAATCGG AGAAGAAAGG TTAATAATCG ATGTAGATTT CCGATCAGAG TTCGATATAG CGAGACAAAC GAGTGGTTAC AAGGCGTTGC TTCAATCTCT ACCGTTCATT TTCGTCGGAA AATCTGATCG GTTAAGTCAG ATTGTGTTTT TGATATCGGA GGCGGCGAAA CAGAGTTTGA AGAAGAAAGG AATGCATTTT CCTCCGTGGA GGAAAGCTGA GTATATGCGA TCTAAATGGT TATCTTCTTA TACACGAGCT TCTGTTGTCG TCGGAGATGT TGATGAGAAG GCGGAGACGG AGACGGATGT TGCGGTGGTG ACGGCGGACA CGGCGGAGAG GGAGGTGGAT AGTGTTGTAG AGATTGAGCT GGTTTTTGAG GAGAAATGTT TATCTCCGAG AGTGAATATT ATTAATTCTT CCTCCTCTCC AAACGGCGGC GATGATGACG TGGCGGTGGA GAGAGAAGTG AAGGCTGTCA CCGGATTAGC TTCACTCTTT AAGGAAAAGC CCTAAATAAA AAATTTTGGA GTTTTTTTTT TCTTTTTCTA ATTTTCAAGG TAAAAAAACA ATTATTAAAA ATATATAACA TTACCAAATA TTCGCTTTTT TTTTTTGTTT ACCTTTTTGT AGTTGTTTTG ACCTCTCTTG TTTTTTCTTT ACAAGGGTTT TTTACCACTT TGTACTTTAG TACCGTCCAC GGTGAAAAAA ATTCCCGAAT AAAATCTTAT CTCTAAAATT TAGTACTTCC GAAACTC 
Length1857
Protein Sequence
Protein Residue
Map Locationscaffold_3: 9714398.. 9716458
Download Sequence
A.thaliana
AGI-codeAT3G22968.1
Descriptionconserved peptide upstream open reading frame 59
TAIR curator summaryUpstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF59 represents a conserved upstream opening reading frame relative to major ORF AT3G22970.1
Alias[CPuORF59][conserved peptide upstream open reading frame 59]
Gene coexpression
MR
MR Locus Description
9.43398 Ahg926058
14.8661 Ahg349774
16.6733 Ahg934191 Phosphotyrosine protein phosphatases superfamily protein
19.5192 Ahg926057
20.4939 Ahg932011
20.7846 Ahg925998 Galactose oxidase/kelch repeat superfamily protein
22.1811 Ahg482229 TRAF-like family protein
29.4618 Ahg322062 RNA-binding protein
29.7321 Ahg929873 branched-chain aminotransferase4
31.5436 Ahg476684 bifunctional nuclease in basal defense response 1
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression