Detail


ID : Ahg480467

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|480467|fgenesh2_kg.3__3168__AT2G20020.1
Sequence
CTGTGGATGA GTCTCTCTAA AACCTTGGCT TCCTCCGACT TCTTCTGTTT TCTCCGGCAA TGTCGTTGAA ACTCAACACT CCTTTTCCAA TTTTCGCGCC ATCTCTATTT CCTAATCATA ACCCAAGAGC GCCCAGCGAG ATCCGATTCT CTAGATGGGG CAACGCTAAT GCAGAACGGT TCGAGCAGCG TCGCCGGAGC CAAGAAGAGC TCGAGGCTGA GATCCGTCGC GACCGCCGAT TCGACGCCGC TACTAAAATC GTCCATACAC ACGATTCCGA TGCCGCAGCT TCTGAGCCTA AAACGTCGCC GTTTAGATCA AGAGGCACTC CTTCACTTCC CTCTGCTCGT TCGATTCCGG GTCGGAGATC CAAATACTCC AAACCCGATT CAGGACCCAA TAAACCCAAG AACAAACCTA GAGTACCCGA TTCGCCGCCG CAATTAGATG CAAAGCCTGA GGTCAAGCTA AGTGAAGACG GATTATCTTA CGTCATCAAT GGAGCTCCTT TCGAATTCAA GTACAGTTAC ACGGAGACGC CAAAGGTTAA GCCATTGAAG CTTCGTGAGC CTGCTTACGC GCCTTTTGGT CCTACGACGA TGGGAAGGCC ATGGACTGGT CGTGCTCCGC TTCCTCAGTC GCAGAAGACG CCGAGAGAAT TCGATTCTTT TCGATTGCCT CCGGAAGGGA AGAAAGGTGT GAAACCGGTG CAGAAACCGG GTCCTTTTCG ACCCGGGTTG GGTCCAAGGT ATGTTTACAC GAAGGAGGAG ATTTTAGGAG AGCCATTGAC TAAGGAAGAG ATTAGAGAGC TGGTTACTTC TTGCCTAAAG ACAACAAGGC AATTGAATAT GGGCAGAGAT GGCTTGACGC ATAACATGTT GAACAACATA CATGATCTAT GGAAGCGGCG AAGGGTGTGT AAGATTAAAT GCAAGGGAGT TTGTACAGTT GACATGGATA ATGTTTGCGA ACAATTAGAG GAGAAAATTG GTGGGAAGGT GATATATAGA AGAGGAGGTG TGCTTTTCCT ATTTCGTGGG AGAAACTATA ACCACAGGAC AAGACCGCGG TTCCCTCTTA TGTTGTGGAA GCCTGTAGCA CCTGTTTATC CAAGGCTGAT TCAACAAATG CCTGAGGGTT TAACTCTTCA GGAAGCTACC GAGATGCGGA GGAAAGGACG AGACCTCATG CCCATATGCA AGCTAGGGAA GAATGGTGTG TATTGTGACC TTGTGAAAAA TGTTAAAGAA GCATTTGAAG TTTGTGAATT GGTTCGGATC GATTGTCAAG GGATGAAAGG CAGTGATTTT AGGAAAATCG GTGCTAAACT CAAGGATCTT GTTCCATGTG TGCTCATATC TTTTGAAAAC GAGCAAATTC TTATCTGGAG AGGACGGGAA TGGAAATCGT CTCTCACAAC TCCAGATAAA AAGGATGATA TCCTTGAAGA TATCGAAGTT GATACTGCCT TGCCGGAAGA TGATGAACCA TCGGTGTCAC CAAATCAGAC TCAAACTGTG ACCCAGAGCC CTCCTCTGGA TTCTATGGAA TTGCAAAATG ATCCAGATGG TCCCGATTTG AGCTCTTCAA CTGTAGATTT CTCGGCAATG GAGGGCACAA GCAATTCTTT AAAGAGCCCG TCTACAAAAG ATCTAACTGA GCCAACGGCA GATAGTTCTA TTCGAGACCA TGAAGAACCT GAACACGAAC CAGAAACATC TGAAGAAATC AGCAAACAAA GCATAGAGAG AGTTCTGAAT CTGATGAAAC AAGCTGTGGA GAGCGGGACT GCGCTTGTGT TAGATGCTAC TGATCTGGAC GCAGACACAG TCTTCGCAAA AGCTGTCGCC TTTTCGACTG TAGCTTCACC GGGACCAGTT TTCCAGCATG GCCTGAGAAA ACAACCAACG GTTAAGAAGC AGGAAAGTCG AGAATTCGGG TACCGAAACT TGGAGGCAAA ATCAAGTAAT GTAGTGGTTT CTAGGAATGC CTCCAAATCA AGTAATGTTG TGGTTTCTGG GAAAAGAGAA GTTGCAGTGA GTGGGGAAAG AGAGGAGGAG GAGGGATTGA AGAAGAAAAT GGACGAGTTT GCTGAAGATT ATAAAGAAGT AATACCACAT GGAACATTGA AGCTAGATGA ACTAGCTAAA CTACTTGCAT AATGAGATTA TCTGTATGTT ATCTGTATTT GTTGAGTAGT GTATAATGTA GTCTAATCAT CATTATCAAA AGTGTAA
Length2237
Protein Sequence
Protein Residue
Map Locationscaffold_3: 19563387.. 19566097
Download Sequence
A.thaliana
AGI-codeAT2G20020.1
DescriptionRNA-binding CRS1 / YhbY (CRM) domain-containing protein
TAIR curator summaryPromotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.
Alias[ATCAF1][CAF1]
Gene coexpression
MR
MR Locus Description
6.32456 Ahg492789 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
8 Ahg480524 nucleosome assembly protein 1;2
11.1355 Ahg937391 translocon at the outer envelope membrane of chloroplasts 75-III
23.9165 Ahg327675 pentatricopeptide (PPR) repeat-containing protein
29.2916 Ahg492065 Met-10+ like family protein
29.3939 Ahg473719
32.311 Ahg315447 ILITYHIA
33.2415 Ahg492293 Double Clp-N motif protein
36.2491 Ahg353700 DNA topoisomerase, type IA, core
39.2428 Ahg494966 tRNA synthetase class I (I, L, M and V) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression