Detail



ID : Ahg483624

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|483624|fgenesh2_kg.4__2684__AT2G44950.1
Sequence
TCACTCTTGT TTTTGTTTCT GTGAGTGCTT TGTGTTGGCG TGTTTGTAAT ATCTTTAGTC GCACAAAGAT CAGACAAGAT TAGAGTTTGG TCGAATTTGG AAGACCGGTG AGAGATTAGG GTTTTTTTTT TTTGTTTTAA TTCCGAGGGG AGCTGCGGAG CAATTGAATT ACCTCGGTTG AAGCAATCAC GTAGCTTGGA TCGTTTAGGG TTTTCTCATT GGGTTTGGGG GGATTTGTAT TCGAGCTTCC TCAAACTCAA TCTGATGATG ATGTGACACA AGCTTAATCC TGTTATTGGC CGATTCTAGG GTTTTTGAAT GGCGAGCACA GGCGAGCCTG ACCGTAAAAG GCGTCACTTT AGCTCCATAT CACCCTCTGA AGCTGCAGCC GCCGTAAAGA AACAGCCTTT CTTTTGGCCC TCCTCCGAGG ACAAGCTTGA TACTGCAGTT CTTCAGTTCC AAAATCTGCA GCTATCACAA AAGCTAGAGG CTCAGCATGT TGAGTGTTCT ATTCTTGAGG ATAAACTTTC TCAGATCAAG GAAAAACAAT TACCATACAG CTCCAGTTTG AAGACTGTCC ATAAGTCTTG GGAAAAGCTT ACAGCTACAG TGGAATCATG CTCTGTTCGT GTGAGTGATT CAAGCAGCGG AGCTCATAGG TTTGTAAACA AGGAGGATGG GTCGTCTCCA GCCGTGAAAA ACGATTTCAT CAACCGGCTA CTCGAAACTG GTGCCACTGA GAGCTCCTCA TCCAATATCT GCTCGAATCG GATGGAAGAA AATGGAGTGA ATACGTCAAG CCAGATGACG CAAACCTTGT CTAACCTAGT AGCCGCGACA GATGATTTGA GGTGTCTGAA CGATGACCTT TATCCCACAG TTCTCAGAAC CAGTCTTGGT AAAGATTTGT GCGGTCAGCT AGCTCTGAGT GAGTTGGAAT CAGAAATTAA AAGTTTCAGA GGGGATCTAG ATGATGTACT TGTGAAGTTC AAATCTCTTT CTAGAGAATT GCAGAGTCAT CGCGATGCTG ATGCTAAAGT TAGAGCAGAC CTCAAACGAA TAAGAGGGGA GCTAGAGGAT GAGGTCGTGG AGCTTCAGCA GTGTAATGGT GACTTGTCAG CATTGAGAGC AGAAAGAGAT GCAACAGCAG GGGCGTTTTT CCCAGTGTTG AGCCTTGGAA ATAAGCTTGC TACCAGTGAT AGGGAAAGGG ATAAACAAAG GGATCTGCAT GACATGGAAA CAGTTCTGAA AGAGTTAACG GTCCTGGCTT CAGGCAGGCT ACAAGAGCTA AAAGATCTTC ATGAGGAGAG GACAAAGATG CTTGAAAAAA TGAGTAATTT ACAGAACAAG TCAAAGTCTG TGAGGTGCAT CTCATCTTCT CAAGCCTGCC TTTCTTTGAA AGACCAGCTA AAAAAATCCA AAGAAGCAGT TTTCCAGTAT ATGGCTTTAC TTGAGAAACT GCAGGTTGAA AAAGATAGTA TAGTCTGGAA GGAAAGGGAG ATGAATATAA AAAATGAACT AGTTGATGTT TCTCGAAGGA CTTCTGCTGT TGCTGATTCC AGAATGGCTT CTTTAGATTC GGAGATACAG AAACAACTGG ATGAAAAAAT GCGAATCAAG ACTAGGCTGG GAAATATATC AAGAGAGCGA GGTAGAAAAG AAATCTTTGC AGATATGAAG GCATTAATTT CTTCGTTCCC CGAGGAAATG AGTTCCATGC GTAATCAATT GGACAATTAT AAAGAGACTG CTGGAGGTAT TCATTCTCTA CGGGCTGATG TCCAGTCCCT CTCTGGGGTT CTATGTAGGA AGACAAAAGA GTGTGAAGCA TTGCATTTGA CATCAGCTGA TTATGCTTCT CAGTTAGGTG ACCTGAATGC TACGGTTTGT GATTTGAAGA ATAGTCATGA GGAGTTAAAG TTGTTTCTGG ACATGTATAA ACGTGAGTCC ACTGATCCGA GGGACATAGC TGAAGCCAAG GAACAGGAGT ACAGGGCTTG GGCTCATGTT CATAGTTTGA AATCATCCCT TGATGAGCAA AATCTGGAGT TGCGCGTTAA GGCAGCAAAT GAAGCTGAAG CCGTTTCCCA ACAAATGTTG GCTGCTGCGG AAGCAGAGAT TGCTGATTTA AGGCAGAAAA TGGATGATTG TAAACGGGAT GTCGCCAAGC ATTCTGATAT CTTGAAATCT AAACATGAAG AACATGGAAC ATATCTTTCT GAAATACAGA CAATTGGAAG TGCCTACGAG GACATTGTAC CGCAAAACCA ACAGCTTTTG CTTCAAGTTA CAGAGAGGGA TGACTATAAC ATCAAGCTTT TCTTGGAAGG CATAAATTCA AGGCAGATGC AAGATACCCT GCTTATCGAT AAATACATCA TGGATAAGGA TATACAGCAA GGCAGTGCAT ATGCCAGTTT CCTATCCAAG AAATCATCAA GAATTGAAGA TCAGTTGAGG TTCTGCACAG ATCAGTTTCA GAAACTAGCC GAAGATAAAT ATCAAAAGTC TGTTTCTCTT GAAAATCTGC AAAAGAAACG TGCAGACATT GGGAATGGCT TGGAACAAGC TAGGTCGAGG ATGGAGGAGT CCCATTCTAA AGTTGAGCAA AGTCGGGTGG ATTATGGGGC ATTAGAACTG GAACTGGAGA TTGAAAGGTT CAACAGGAGA AGGATAGAGG AGGAAATGGA AATAGCCAAA AAGAAAGTTT CTCGTCTTCG GTCTCTCATA GAAGGATCAT CGGCCATTCA AAAGCTCCGA CAAGAACTCA GTGAATTCAA AGAAATTCTG AAGTGTAAGG CCTGCAACGA TCGCCCAAAA GAGGTGGTGA TTACGAAGTG CTACCATTTG TTCTGTAACC CATGTGTGCA AAAGCTCACA GGAACTCGGC AAAAAAAGTG TCCAACATGC TCAGCAAGTT TTGGGCCTAA TGATATTAAA CCTATCTACA TATGACCACA CCAAAACTCT CTGAGCATGA TGATGTATGA TGAAACTGTG AACCACACAC AGGTACTTTT TCTCATATAG GATAAACATT AGATCTCTCT GTAATTATTA CTCTCTTTTA TTGGGAAAGG TCATGAAGAA TAATGGTATA TGGCAAATCA GAAGTTTTGA GGAACCATTG TGGGATTTTT GATCATGTGA TAGAGAATAG GTAACACTTT TAGGGTTTAT GTCTTTGGCG ATCCTTCCTC TTTGTTTGTA ATTTGGAACA TGGTTTCCGC AATTGATTTT TCAGTTAATC TTCTTTTTTG TATGATCCAA ACGTGTGTGT TATTGCTCTA GTGTTCTAAG ATTCTCAATT TAGAAAACAC GAGGCAAGAT TTTGGAT 
Length3337
Protein Sequence
Protein Residue
Map Locationscaffold_4: 20792400.. 20798900
Download Sequence
A.thaliana
AGI-codeAT2G44950.1
Descriptionhistone mono-ubiquitination 1
TAIR curator summaryThe gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.
Alias[HUB1][RDO4][histone mono-ubiquitination 1][REDUCED DORMANCY 4]
Gene coexpression
MR
MR Locus Description
11.6619 Ahg496712 CPR5 protein, putative
11.8322 Ahg936415
16 Ahg934690 SAC3/GANP/Nin1/mts3/eIF-3 p25 family
16.3095 Ahg912607 nucleic acid binding
17.8326 Ahg493100 heat shock factor 1
21.6333 Ahg889261 Myosin family protein with Dil domain
21.7715 Ahg485467
22.6495 Ahg340056 Chaperone DnaJ-domain superfamily protein
26.3059 Ahg478719 BRI1-like 3
28.9828 Ahg487416 chaperone protein dnaJ-related
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression