| Annotation |
|---|
| Description | jgi|Araly1|485819|fgenesh2_kg.5__1811__AT3G54220.1 |
| Sequence |
AGAAAGAGTT AACATGAATA GAGATAGAAA GAGTCATTAA ATGTACGAAG CGACATTCAC AATAATTCGA AAGGTGGAAG ACGACTTAGA TACGGCCAGG CTTCACTGTC CTCGTCCTCC TCAATACCCA AACCCCTTTT TCCCGGGATT CATCTCCAAC CCACTTCCTT CCAAAATCAC CCCCTCACTG AGTTTTTGCT TTTTCTCATT TACTCATCGG AGATCGTGAT GAAGATGAAG TAATTTAAGA ATCTCCCCCA TTGATTAAAG AGTCTAGCTT TTCTTACTAC CAAACCCTTT TCTGTTTGGA AATTTTCGAT TTTGGATTTT GCCCTTTTCT TCACTATTTA TAACCATGCA ATCCCACGAC CAACCCTTCA ATCTCCATGG CGGAATCCGG CGATTTCAAC GGTGGTCAAC CTCCTCCTCA TAGTCCTATA AGAACCACTT CTTCCGGTAG TAGTAGCAGC AACAACCGTA GTGCTCCACC TCCTCCTCCT TTAGTGATGG TGAGAAAACG ATTAGCTTCC GAGATGTCTT CTAACCCTGA CTACAACAAC CCCTCTCGCC CTCCTCGCCG TGTCTCTCAC CTCCTTGACT CCAACTACAA TACTGTTTCA CCACAACAAC CACCGGCGAC GGTTGTATCT TCTCAACCAA ACCCACCACT CTCTGTCTGT GGCTTCTCCG GTCTTCCGGT TTTTCCTTCA GACCGTGGTG GTCGGAATGT TATGTCCGTA CAACCAATGG ATCAAGACTC TTCATCTTCT TCTGCTTCAC CTACAATTTG GGTTGACGCC ATTATCAGAG ACCTTATCCA CTCCTCAACT TCAGTCTCTA TTCCTCAACT TATCCAAAAC GTTAGAGACA TTATCTTCCC TTGTAACCCA AATCTTGGTG CTCTTCTTGA ATACAGACTC CGATCTCTCA TGCTTCTTGA TCCTTCCTCA TCCTCTGACC CTTCTCCTCA AACTTTCGAA CCTCTCTATC AGATCTCCAA CAATCCTTCT CCTCAACAAC AACAACAACA ACAACAACAC CAGCAACAAC AGCATAAGCC TCCTCCTCCT CCGATTCAGC AGCAAGAAAG AGAAAATTCT TCCACCGATG CACCACCACC ACCAGAGACG GTGACGGCCA CCGTCCCCGC CGTGCAAACA AATACAGCAG AGGCGTTAAG AGAGAGAAAA GAAGAAATTA AGAGACAAAA GCAAGACGAA GAAGGTTTAC ACCTCCTCAC ATTGCTGCTA CAGTGCGCTG AAGCAGTCTC TGCTGATAAT CTCGAAGAAG CAAACAAGCT TCTTCTCGAG ATCTCTCAAT TATCTACTCC TTACGGGACC TCAGCGCAGA GAGTAGCTGC TTACTTCTCG GAAGCTATGT CAGCGAGATT ACTCAACTCG TGTCTCGGGA TTTACGCGGC CTTGCCTTCA CGGTGGATGC CTCAAACGCA TAGCTTGAAG ATGGTCTCTG CATTTCAAGT GTTTAATGGG ATAAGCCCAT TAGTGAAATT CTCACACTTT ACAGCGAATC AGGCGATTCA AGAAGCGTTT GAGAAAGAAG ACAGTGTACA CATCATTGAC TTGGACATTA TGCAAGGACT TCAATGGCCT GGTTTATTCC ACATTCTCGC TTCTAGACCT GGAGGACCTC CTCACGTGCG TCTCACGGGA CTTGGTACTT CCATGGAAGC TCTTCAGGCT ACAGGGAAAC GTCTTTCGGA TTTCGCCGAT AAGCTTGGCC TGCCTTTTGA ATTCTGCCCT TTAGCTGAGA AAGTTGGAAA CTTGAACACT GAGAGGCTCA ATGTAAGGAA AAGAGAAGCT GTGGCTGTTC ACTGGCTTCA ACATTCTCTT TATGATGTCA CTGGCTCTGA TGCACACACT CTCTGGTTAC TCCAAAGATT AGCTCCTAAA GTTGTGACAG TAGTGGAACA AGATCTGAGC CACGCTGGTT CTTTCTTAGG AAGATTTGTA GAAGCAATAC ATTACTACTC CGCACTGTTT GACTCGTTGG GGGCAAGCTA CGGCGAAGAG AGCGAAGAGA GACATGTAGT GGAGCAGCAG CTATTATCGA AAGAGATACG GAATGTATTG GCGGTTGGAG GACCGTCGAG GAGCGGTGAA GTGAAGTTTG AGAGCTGGAG GGAGAAAATG CAACAATGTG GGTTTAAAGG TATATCATTA GCTGGCAATG CAGCTACACA AGCGACTCTA CTCTTGGGAA TGTTTCCTTC GGATGGATAC ACTTTGGTTG ATGATAATGG TACACTTAAG CTTGGGTGGA AAGATCTCTC GTTACTCACT GCTTCAGCTT GGACACCTCG TTCTTAGTTT TCTCTCTTTT TTCAGAAACA ATGTGCCCAT AAATAGATCT ACTTGGGTTT TACTTTTTTG TTTATGTATC AAAAAGAGAG GATTTTTAAG TCAAATTGTT CTCACTCACA CTCTGTATGG ACTACCTGAT TGGTGGAATA CATAGAAGTT |
| Length | 2480 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 15982830.. 15985447 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G54220.1 |
| Description | GRAS family transcription factor |
| TAIR curator summary | Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR. |
| Alias | [SCR][SGR1][SCARECROW][SHOOT GRAVITROPISM 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5.2915 |
Ahg480837 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 6 |
Ahg496447 | proline-rich family protein |
| 10.7703 |
Ahg473107 | Apoptosis inhibitory protein 5 (API5) |
| 11.8322 |
Ahg313572 | |
| 12.1244 |
Ahg487232 | 3'-phosphoinositide-dependent protein kinase 1 |
| 15.4919 |
Ahg492266 | C2H2-like zinc finger protein |
| 15.6525 |
Ahg481718 | Argonaute family protein |
| 20 |
Ahg475671 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 |
| 22.8035 |
Ahg482705 | Transducin/WD40 repeat-like superfamily protein |
| 25.0998 |
Ahg492795 | double-stranded RNA binding protein-related / DsRBD protein-related |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|