Detail



ID : Ahg487399

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|487399|fgenesh2_kg.6__533__AT5G05970.1
Sequence
AATCTCATAG GGTTCAAAAT TTTGTTTCTG CTGTTCTCTC GAGGAAAGGT AGAGTTCCCG CATTGTCCGG ATTCTCAGAG ATTCATTCAT TAATCTGAGT TTTCTCGGGA AAATTTACTG ACTCTGAGTC TAACCCGAAT CCAGCGATGA TGTCGAACTT GGTGGAGCCT TCGTGGCGCC TTCTGGCAGC CAGCGGCGGA GATACGGTTA AGCTTTTCGA CGTTTCTGCC GATTCCGGCG ATCCCTGCGT TTTGAGCTAT ACTCCGACAC CTGGTTGTGC TGTCAACTCC GTCAAGTGGA ATCATACGAA TTTAGTCGTG GCGAGTACGG GAGAAGATAA GAAGATATCC CTGTGGCGGA AAAATGGGCA GAGTTTAGGA ACAGTTCCAG TTACTGGCAA GGACGGTGGT GATAATGCTG AGGAATGTTT ATCGGCTATT AGCTTCAGCA AAAAAGGGTC CAGGTACATT TGTTCTGGAG GAACTGGTCA AATTGTTAAG ATATGGGATC TGCAAAGAAA GCTTTGTATT AAGAAGTTGA AGGGTCATAC AAGTACAATA ACGGGTGTCA TGTACAATTG CAAAGATGAG CATTTGGCTT CTGTTAGTGT TGGTGGGGAT CTGATAGTCC ACAACCTTGC ATCTGGAGCA AGGGCTACAG AACTCAAAGA TCCAAATGGG CAGGTATTAA GGTTGCTTGA TTATTCAAGG TCCAGTCGAC ACCTCCTACT CACTGCAGGT GATGATGGCA CTGTGCATCT GTGGGACACA ACTGGTCGTA GCCCCAAGAT GTCCTGGTTG AAGCAGCATT CGGCACCAAC TGCTGGCGTT TGCTTCTCTC CATCAAACGA AAAGATAATT GCTAGTGTGG GGATGGACAA AAAGCTTTAC ACTTATGATT CTGGATCCAG AAGATCTTCG TCCTGCATTG CCTATGAGGC ACCTTTCTCC TCTTTGGCGT TTGGGGATAA TGGTTATATT CTGGCAGCTG GAACCAGTAA TGGTAGAGTA GTGTTTTACG ACGTCCGTGG AAAACCGCAG CCTGTTACTG TCCTGCACGC TTTCAGTAAT TCAGAGGATG TAACAAGTCT TTCATGGCAA ACATCAAAAC CAGTTATTGT GAATGAGAAA AATTACACTT CTGAGATGGC TCTTCTTGGC AGTACTGTGG AAGATTCAGT TGTCATTCCG GATCCACTTC CCTCAACGAC ACCCTCAGCT TCACAGTCCG CTTTGGCACC AGGTTCCCGT GGAGTTTCCG CGAGTACTGT AAATGCATCA TCAGTTGAAC AAACACCAAA TAGAACTCAT CTATGGCCTG GTGGGCCACT GGGCAGACTG CATGCACTTC GTGCAAGTGA CAGTTTTAAT GATGATATGG GTGTTTTTTC ACCTATTATT GACGTATCAT CTGTTGAGAA GTGGGCTGAT AGTGAAGGAT TCAATAATAA GGACCATTTC GTTGTTGACA AAAAGCCGTC CTCTTTGCTA TTTCCTTCAT CCAGCAAGGG ATATTCGTTC GGAGACGATG GAAACAAGGA ACATCCGATA TTCGACTGGA AACCAAGTTC TACTTCGAAA CAGGATGACA CGAGGGTTGC TTTTTCGTCT TTTGGATCTA CTACGCCAAC AGCATCATCC AAAAGTGAAG ACACTGCCTT GACACCTCCA GAAGCATGGG GTGGCGATAA ATTTTCTGAG AAGTTTAACC AGTTGGCCAA TGAGAAATTT TCTGATAAAT TTAGCCACCT GCATGCACCT TCACGTCTCG CGGTTTCAAG CACAGGTGCT AGTACATCTG GATCAATGTT CTCTAGCTCT CGAGATTTCC CCTTGTCGCT TGGTCAGACA AACCTCGCAA ACGCTAGCTC AGAATTCCCA CGGATCAGAG ACTTCTCTTC AACCTTTGAG ACATCCTCAA CACAGACAGA CAACAACTTG CCTTCAAGCC CATTGTTTAC AAAAGGCATC ACAGCTCCGG GTAACATTGA TTCATTGAGG CTATCACCAA ATTTTACTCG TAGGTTCTCA ACATATGCTG AGAGAATCAG CACCACTTCT TCCTTTAGTG ACGGGGCCTC TCTCACTCTG GGTGGTTCAC CCAAGATAAA GAAAACAGGC GCAGAAACGA GAGAGGAAGT TTTAAATCAT CTGTTGCCGA GACCAGAGAC GGTGGCTGCA ACAGAAGCAG GAGCTATGCC GCTTATGAAT GGAGGGTTGA AGCAACCTCA AACGGATCAA CAGCAGATGA TGGGTAGTAG CAATTTCACG CTTCAGCTAT TTCAAAGAAC GCTCGAAGGA ACTCTGGATT CTTTCCAAAA CTCAATTCAT GATGACGTGA GGAACCTTCA CGTTGAGATC CTCAGACAGT TCCACATGCA CGAGATGGAG ATGTCGAAGG TGTTAAGCTC GATTCTGGAG AACCAAGCGG AGCAAATGAA GGAGTTAAAA TTGTTGCGAA AAGAGAATCA AGAGCTCAAA GAAAGGCTAT AGAGGAGACC GTTGTGAGTT TTTGTGTGTT CAAATGTTGT GTGGATTTCT ATCATTCTCT TTGGTACTCT TCATGTGTTC CTCTCCGTTT TGCGATCGAA TCCATTTTGA TTTCATATTA TGATTGATTC GTTTGGGTTT TGGTAGAGAT CTTGTTTACA TTGTAACATT GCATTTCCAT TAATCTGGAG GAAGCAAACC ATTAATCATG TCACAACGTT TGC 
Length2713
Protein Sequence
Protein Residue
Map Locationscaffold_6: 2116304.. 2120695
Download Sequence
A.thaliana
AGI-codeAT5G05970.2
DescriptionTransducin/WD40 repeat-like superfamily protein
TAIR curator summarya WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis
Alias[NEDD1][NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1]
Gene coexpression
MR
MR Locus Description
9 Ahg487806 Putative endonuclease or glycosyl hydrolase
9.48683 Ahg481505
11 Ahg353309
20.5183 Ahg491015 Leucine-rich receptor-like protein kinase family protein
21.3542 Ahg941831 Protein of unknown function, DUF617
27.2397 Ahg933951 DHHC-type zinc finger family protein
28.931 Ahg479958 MUTS homolog 7
29.6985 Ahg949533 Protein of Unknown Function (DUF239)
35.327 Ahg926567 Methylthiotransferase
35.5528 Ahg317213 dicer-like 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression