| Annotation |
|---|
| Description | jgi|Araly1|487419|fgenesh2_kg.6__553__AT5G06160.1 |
| Sequence |
GATTTTCCTT TTCTCTTGGA TTGGCGTTAA AAATTTTGCC GGCGAGATTT CGGATTGAGG AAAAGAAAAG AGATTGGAAT TAGGGTTTAG ACTCCGGCGA AGAAGAAGAT CTCAAAGCTT CGAAGACAGA GAAGATGTCG TCGACTCTCC TCGAGCAAAC TCGCTCCAAT CATGAAGAGG TTGAGAGATT GGAGCGATTG GTTGTGCAAG ATCTACAGAA AGAGCCACCG TCCAGCAAGG ACAGATTGGT CCAGGGTCAT CGTGTTCGTC ACATGATTGA GTCCATCATG CTCACCACTG AGAAACTTGT TGAAACCTAT GAAGATAAGG ATGGGGCGAG GGATGACGAG ATTGCAGCGC TTGGTGGCCA GACTGCGACA GGGACAAATG TGTATAGTGC ATTTTATGAT CGTTTGAAAG AGATACGTGA ATATCATAAA AGGCATCCTT CTGGACGTCT TGTTGATGCT AATGAAGACT ACGAAGCACG CCTGAAGGAG GAACCAGTTA TTGCGTTCAG TGGAGAGGAA GGCAATGGTC GGTACTTGGA CTTGCATGAT ATGTATAACC AGTACATCAA CTCTAAATTT GGGGAAAGGG TTGAATATTC TGCTTACCTT GATGTTTTTT CTCAACCAGA GAAAATCCCG CGTAAACTGA AGTTATCGAG GCAATACAGG AAGTATATGG AAGCTCTGCT AGAGTACTTG GTCTACTTTT TCCAGCGAAC CGAGCCGTTG CAAGATCTTG ACCGGATACT TTCTAAGGTT TGGTCTGATT TTGAAGAGCA ATATGCAGAT GGAAAAGTAG AAGGCTGGGA GAATGGCCAG GACAATGAAC TTGTTTCATC TCAGCATACT GTCATAGATC TTGATTATTA CAGTACAGTC GAGGAACTGG TAGATATAGG ACCTGAAAAG CTTAAGGAGG CATTGGGAGC ATTAGGACTG AAGGTTGGTG GTACTCCGCA GCAGCGTGCC GAGAGACTTT TCCTGACAAA GCATACGCCT TTGGAAAAGC TGGATAAGAA ACATTTTGCC AAAGCTCCAC ACAACGGGAA ACAAAACGGA GATGCCAAAT CAACACATGA GTCTGAAAAT GCTAAAGAGA TTGCACTAAT AGAGGCGAAA GTGAAGAAAC TCTGCAATTT ACTTGATGAG ACCATTGAAA GGACAAAACA AAACGTTGTA AAGAAACAGT CGTTGACATA TGAAGAAATG GAGGGAGAAC GTGAAGGGGA GGAAGCTAAT GCCGAATCAG AAAGTGATGA CGAGGACGGT GAGATTTACA ATCCGCTGAA GCTGCCAATA GGTTGGGATG GGAAGCCTAT ACCATACTGG CTCTACAAAC TTCATGGCCT TGGCCAGGAG TTTAAATGCG AGATATGTGG GAACTATAGC TATTGGGGAA GAAGGGCGTT TGAGAGACAT TTTAAAGAAT GGCGACACCA ACACGGAATG CGTTGCCTAG GAATCCCAAA CACAAAGAAC TTCAATGAAA TCACTTCGAT TGAGGAAGCG AAAGAGTTGT GGAAGAGGAT ACAGGAGAGG CAAGGAGTGA ACAAATGGAG GCCAGAACTT GAAGAAGAAT ATGAAGATCG TGAAGGTAAC ATTTACAACA AGAAGACTTA CTCTGATCTT CAACGCCAAG GTCTTATCTG ATTGATGAAA TCTTCTCTCC GTACTATATT TTGTAAAATC AAACCATTCG TCATCTTTTT GTGAGGTTAC TTTTGTCACC TTAAAACAGT TCTTAGTTTA TGGTGTATGT TTTTTTGAAT TAACTATCAC AA |
| Length | 1792 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 2189956.. 2193492 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G06160.1 |
| Description | splicing factor-related |
| TAIR curator summary | Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate. Expressed strongly in gametophytes and weakly in sporophytes. |
| Alias | [ATO][ATROPOS] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg333714 | |
| 4 |
Ahg943837 | Protein of unknown function (DUF3414) |
| 5.83095 |
Ahg899624 | natural resistance-associated macrophage protein 3 |
| 6 |
Ahg492708 | C-terminal domain phosphatase-like 1 |
| 8.66025 |
Ahg897056 | |
| 8.83176 |
Ahg477988 | Thioredoxin z |
| 11.1803 |
Ahg493790 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 11.4018 |
Ahg482130 | DNA topoisomerase, type IA, core |
| 11.4891 |
Ahg476621 | plastid transcriptionally active 2 |
| 11.4891 |
Ahg946347 | RNA helicase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|