| Annotation |
|---|
| Description | jgi|Araly1|488176|fgenesh2_kg.6__1310__AT5G13570.1 |
| Sequence |
GCCCACCTTT TAGATACACA CAATCGTCGC ACTCCCAGAT TCTTCTCCGG AGCGATCAGA TTTCACCGAC GACGGTTCCT TTGCCTCCTC TTTCAATCGG AGGAAGACTA AGCTTAGAGC AACAGTTATA TATCTATCTA TAGAGAGGGA GAGAGAGAGA TAGAGAGCTC CTCTCATCCA GTATTAGGGT TTTAAAGGCA AGAAGAATTC ACTACTAGAA CAAGAGGAGG AATAAAAAAA TGTCGGGTCT CCATCGATCA TCAAGTTCAT CGAAGAACAT CGGAAATTGC CTCCCCTCCA AAGAACTTCT TGATGATCTT TGCAGTCGAT TTGTTTTGAA TGTCCCTGAA GAAGATCAAC AGTCATTCGA GAGAATTTTG TTTCTGGTGG AGTATGCTTA TTGGTACTAT GAAGATAATG CTGTAGAGAA TGATCCCAAG CTTAAGTCCC TGTCCTTGAA AGAGTTTACT TCGCTCTTAT TCAACAGCTG TGATGTGTTG AGACCTTATG TTACTCACAT TGATGACATA TTTAAAGACT TCACTTCTTA CAAGTGTCGA GTTCCCGTCA CTGGGGCAAT CATCCTGGAT GAGACATATG AAAGGTGCCT GTTGGTGAAG GGATGGAAAG GATCGAGCTG GAGCTTTCCC CGCGGGAAGA AGAGCAAGGA TGAAGAAGAC CATGCTTGTG CCATACGTGA GGTCTTAGAG GAAACTGGAT TTGATGTCTC AAAGCTACTC AAGAAGGAAG AATATATAGA GTTTGTTTTC AGGCAGCAAA GAGTACGACT ATACATAGTT GCTGGGGTGA AAGAGGATAC AGTTTTTGCA CCACTCACAA AGAAGGAAAT CAGTGAAATC GCATGGCATC GGCTTTATCA TCTTCAGCCA GCAAGTAATG AGGTGATAAC TCATGGAGTT TCTGGTCTCA AATTGTACAT GGTGGCACCA TTTCTTTCGT CGTTGAAGTC ATGGATATTA AAGCATCCTT CACCTGTAGC ACGGAGACAT AACAAGCCCC TTAAAGCACT CTGCGTGTGG AATGCAAGGA CTAGTCTTGG AGGGAACGGG ACAGCAACAG TGGAAAGCCA CAATAGAAAG CCTGAACTCA GGACAACCAC AATGGAAAGC AACAATAGAA AGCCTGAACT CAGAACAACA ACAATGGAAA GCCACAATAC AAAGCCTGAA CCCAGGAAAA CAACAATGGA AAGCCACAGT ACAAAGCCTG AACTCGGGAC AGCAACAGTA GAAAGCCACA ATACAAAGCC TGAAGTCGAC CATCCTCAGG ACATAGAACC TGCAGACAGT TTCATAAACT TCAAGTTCGA CAAGTCAGTT ATCTTACGGG CGATGGAATA GGTCATATAT GGGTTGGATT GGTGTTGGGA GTTATGATGC GGTTGGATTG GTGGGTTTGT CTATAGCAAA ACCGTTGGAT ATGTTCATAC ACGCTGGTAC CTTTCTATTT CTTTGCCATT TGGTTTATAT ACCTCTCGTT TGTTCTAGAA TGAAAGGGTT GTTGTACATG ATGGTTGTTA GTAGGGAAGT GGTGAATCCT TTGGATCATG GCTTTAGATG ACAATGGTTG CGACCAGCTA TAAAGGTTAA AAGAGTTTCT TATCCGAG |
| Length | 1628 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5269801.. 5272802 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G13570.2 |
| Description | decapping 2 |
| TAIR curator summary | Encodes DCP2 with mRNA decapping activity. DCP2 forms a mRNA decapping complex with DCP1 (At1g08370) and VCS (VARICOSE) (At3g13300). Recombinant DCP2 is enzymatically active in vitro, generating from capped mRNAs m7GDP, and 5Â’-phosphorylated mRNAs. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP1. |
| Alias | [ATDCP2][DCP2][ITS1][TDT][decapping 2][INCREASED TRANSGENE SILENCING 1][TRIDENT] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.3589 |
Ahg951350 | acyl-CoA oxidase 2 |
| 5.91608 |
Ahg898127 | |
| 6.9282 |
Ahg476803 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 11.6189 |
Ahg313379 | Plasma-membrane choline transporter family protein |
| 19.1311 |
Ahg494587 | Calcium-binding EF-hand family protein |
| 22.5832 |
Ahg483690 | RING/U-box superfamily protein |
| 25.6515 |
Ahg473046 | dormancy-associated protein-like 1 |
| 26.2679 |
Ahg491165 | xanthine dehydrogenase 1 |
| 26.8514 |
Ahg931448 | casein kinase I-like 5 |
| 27.1477 |
Ahg350108 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
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