| Annotation |
|---|
| Description | jgi|Araly1|488476|fgenesh2_kg.6__1610__AT5G16260.1 |
| Sequence |
CTCTGTATCC AAACAAGGTC AGGGTCCTCT ACCGTCTTCC TCCTGCTTCC GCCATTCTTC GTCGTCTCTC GAACGCGTCA CTCTTTTAGT CGGTTTTGTC GTTTACAGTA ATTTGCGATT TTTTGAAGGT TAACGAGAAA CAAAAATGTC CGACACTGAT AATCTACAGC TTCCACCATC ATCGACAGGG GCAACAGTTG CAGCTACTGA TCTTGGTTGG TACATTCTTG GTGAAAATCA GCAGAGCCTG GGCCCATATA CTTTCTCTGA GCTTTGTGAC CATTTCAGGA ATGGTTACCT ACTAGAAACT ACCCTTGTCT GGGCTGACGG AAGAAGCGAA TGGCAACCAC TATCTGCCAT TCCCGAGTTG ATGTCAAGGA TATCCGAAGC TGAGATTGTC TATCCGGCTG TAGGTGCATC TGGGCCGATA AATGGATCTA ATGCTGGAAC CGAGCAAGAG AAGCAAGATT ATACTGCCTC TGCTAGTACT GAGGATGAAT TTCAGAAATG GCAGAGAGAG ATTAAAGAAG CAGAAGAGGA GGCTGAAAGG TTGAAAAATG GCTCTGTCTC TGCTACTGAG CTTGTTGAAG ATGATCATGA AAGGGCTTCT TCACCACCTG AGGGCGAAGA TGAGTTCACA GATGATGATG GAACGAGATA TAAATGGGAC AGAGCTCGTA GGGTATGGGT TCCCCAGGAC GATCCACCAC TGGGTAGCGT TGACCCGTAT GGACTCGAAG AGATGACCTT TGCTAAGGAA GACGAAGTAT TTCCAACGAT TAACATTCTT GATACTTCTG TTGATAAAAA GGATGCCGCT AAGGATGATG TGGCTGGTAA GAAAGAAGAA GATGGCTCTG ATGAAACAGC TGAAATAAAC AGTAACGGCA AGAGAAAGCT ACCAGAGCCA GAAACTGAAA AGAAGGAACC AAACAAGCCT CCAGATTCGT GGTTTGAGTT AAAAGTCAAC CCACATATTT ATGTTACTGG GTTGCCCGAT GATGTCACCC TCGAGGAAGT AGCTGAAGTT TTTTCTAAAT GCGGCATAAT TAAGGAGGAT GAAACTGGCA AGCCTCGGAT AAAGCTTTAC AGTGACAAGG GGACAGGAAA ATTAAAAGGC GATGCTCTTA TCACGTATAT GAAGGAGCCC TCAGTGGATC TGGCAATTAA AATCTTAGAT GGGGCTCCGT TACGTCTTGC TGACAAGCTC CTAATGTCAG TTTCTCGAGC TAAGTTTGAG CAGAAAGGGG AGAGATTCAT AACTAAGCAA ACCGACAACA AGAAGAAAAA GAAGCTGAAA AAGGTCGAGC AAAAGTTGCT TGGATGGGGT GGTACAGATG ATGCTAAGGT CTCAATACCT GCAACGGTTG TTCTGCGCTA CATGTTCAGT CCAGCTGAAT TGAGGACTGA TGAGGATCTG GTTGCTGAGT TAGAGGAAGA TGTGAAAGAG GAGAGTTTGA AGCATGGACC GTTTGACTCA GTGAAGGTAT GTGAGCATCA TCCACAGGGT GTTGTTCTTG TAAGATTCAA GGATCGGAGA GATGCACAGA AATGTATAGA AGCAATGAAC GGTCGATGGT ATGCAAAGAG ACAGATACAT GCGAGCCTCG ATGATGGATC AGTGAACCAT GCTACAGTTA GGGATTTTGA TTTGGAAGCC GAACGGTTAG ATCAGTTTTC AGCTGAACTG GAAGCTGATG AGTAAAAACA AAAGCACAAT GATCTAAAGC CGGGAAGATT TTGGATGATT ATTCTGGGAA ACTCAGGTTT CTGATGTAAA TCAGTAGGCA CAGACACATC CGAATCAGAC CAAGGCAAAC CTTACCTGTA GTAAAATTAA CGAATAAGAC TGCACTTGCG AGTGTATTTT GATATTCGTT TACTAAAAA |
| Length | 1889 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6337849.. 6342605 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G16260.1 |
| Description | RNA binding (RRM/RBD/RNP motifs) family protein |
| TAIR curator summary | Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. |
| Alias | [ELF9][EARLY FLOWERING 9] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg483938 | spliceosomal protein U1A |
| 6.63325 |
Ahg946737 | Proteinase inhibitor I25, cystatin, conserved region |
| 15.4919 |
Ahg493925 | 20S proteasome beta subunit PBB2 |
| 19.4422 |
Ahg933117 | topoisomerase II |
| 20.347 |
Ahg474563 | carbon-nitrogen hydrolase family protein |
| 21.2132 |
Ahg484579 | NADPH:quinone oxidoreductase |
| 21.7256 |
Ahg470815 | ribosomal protein L29 family protein |
| 22.5832 |
Ahg332329 | ABC transporter family protein |
| 26.8328 |
Ahg476809 | ARID/BRIGHT DNA-binding domain-containing protein |
| 27.6586 |
Ahg943680 | UBX domain-containing protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|