Detail



ID : Ahg488978

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|488978|fgenesh2_kg.6__2112__AT5G20720.2
Sequence
GTCTATCTCT CTCTCTACTG CAGTTTTTAG GGTTTTATCC TCCGAAAGTA TCCTCAGCAA GAAATGGCGG CGACTCAACT TACAGCATCA CCAGTGACTA TGTCAGCAAG GAGCTTAGCC TCGCTGGATG GTCTAAGAGC TTCAAGTGTC AAGTTTTCAT CTTTGAAACC AGGGACCCTT AGGCAGAGCC AGTTCCGTCG TTTGGTTGTC AAAGCTGCTT CTGTTGTTGC CCCTAAGTAT ACTTCAATTA AGCCATTGGG AGATCGAGTT TTGGTGAAGA TCAAGGAGGC AGAGGAAAAG ACTTTAGGAG GTATCTTACT ACCATCCACT GCTCAATCAA AACCTCAAGG AGGTGAAGTC GTTGCTGTGG GTGAAGGAAG AACAATTGGG AAGAACAAAA TCGATATCAC TGTCCCTACT GGAGCACAAA TTATTTACTC CAAATACGCA GGAACTGAGG TGGAGTTCAA TGATGTGAAG CATCTCATTC TCAAGGAAGA TGATATTGTT GGCATTCTTG AGACAGAGGA CATCAAAGAT CTCAAACCTT TGAATGACCG AGTCTTTATT AAGGTTGCTG AGGCAGAGGA GAAAACAGCT GGAGGGTTGT TGTTAACCGA GACTACTAAA GAAAAGCCTT CTATTGGCAC GGTGATAGCA GTTGGACCGG GTTCCCTAGA CGAGGAAGGT AAAATTACTC CTCTACCAGT ATCGACCGGA AGCACAGTTC TTTACTCCAA GTATGCTGGT AACGACTTCA AGGGCAAAGA TGGTTCCAAC TACATTGCCC TCAGAGCTTC AGATGTGATG GCTATACTTT CTTAGTTATG TCATATCTTT GTAATCTGCA ACTTGTATCC CAATTGTGGA AATTTTTTCG TAAACGGCCT GAGCATAATC TGGAATAAAG ACTTGAGTTG GAAA 
Length924
Protein Sequence
Protein Residue
Map Locationscaffold_6: 8358685.. 8360420
Download Sequence
A.thaliana
AGI-codeAT5G20720.1
Descriptionchaperonin 20
TAIR curator summaryEncodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.
Alias[ATCPN21][CHCPN10][CPN10][CPN20][CPN21][CHLOROPLAST CHAPERONIN 10][chaperonin 20]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg481708 chaperonin-60alpha
5.09902 Ahg474606 chaperonin 60 beta
10.247 Ahg928524 elongation factor P (EF-P) family protein
10.5357 Ahg941581 Ribosomal protein S8e family protein
11.4891 Ahg473757 ribosomal protein 1
13.4907 Ahg919727 Translation protein SH3-like family protein
15.8745 Ahg470426 Ribosomal protein L14p/L23e family protein
16.2481 Ahg926602 40s ribosomal protein SA
16.2788 Ahg484305 Chaperone protein htpG family protein
17.2047 Ahg946494 Ribosomal protein L23/L15e family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression