| Annotation |
|---|
| Description | jgi|Araly1|488981|fgenesh2_kg.6__2115__AT5G20730.1 |
| Sequence |
CCTTAGTTTT GTTTTTCTCT TTCGATTCTT TTTCCAGATT TCTTTTTATA GAAACCCGTC TCTTTGATTC CCCAAGAAAG GAAAGGAAAG CAAAGAAGAG CAGCTAAATC AAGTAACTTT GCGGGTTTTT TGAATTATCT GACTTTAGTT GAAGAGCTTC GTTAAAAACG GAATCTTTTT TAAGGTCGTA TGCTTTATTT GTCTCTCCGG AGATTCCGCG TGTGAAAAGT CGTGGTTTTT GATCTCTTTG AGATACTTAA AATTTCCGAG AAATTGGCGG CTCTGTCGGA GATAAAAAGC AGAGATCTTG GAGTTCCCCA TTTCTGATTA ACGATTCTTT CTTTCTGCTG TAACTTGAGC TAGAAAGCTA GAAAGAACTT GAGTGAAAGT TTAGGGCTTT TGATGAAGCT CTCACGCAAA GAGCTTAGCT TTGTATAAGC TCAGATTCAG ATTCTTAATT CTTCAGAGAA AGTAAAGTTC AGTGATCATG AAAGCTCCTT CATCAAATGG AGTTTCTCCT AATCCTGTTG AAGGAGAAAG GAGAAATATA AACTCAGAAC TATGGCACGC TTGTGCCGGG CCACTGATTT CGTTGCCTCC AGCAGGAAGT CTTGTTGTTT ACTTCCCTCA AGGTCACAGT GAGCAAGTCG CCGCTTCAAT GCAGAAGCAG ACTGATTTCA TACCAAGCTA CCCGAATCTT CCTTCCAAGC TCATATGCAT GCTCCACAAT GTTACTCTGA ATGCTGATCC TGAGACGGAT GAGGTCTATG CGCAGATGAC TCTTCAGCCA GTAAACAAAT ATGACAGAGA TGCATTGCTT GCTTCTGACA TGGGTCTTAA GCTAAACAGA CAGCCTAATG AATTTTTCTG CAAAACCCTC ACGGCGAGTG ACACAAGTAC TCACGGTGGA TTTTCTGTAC CCCGACGAGC AGCGGAGAAA ATCTTTCCTG CTCTGGATTT CTCGATGCAA CCACCTTGTC AGGAGCTTGT TGCTAAGGAT ATTCACGACA ACACATGGAC ATTCAGACAT ATTTATCGAG GTCAACCAAA AAGGCACTTG CTGACTACAG GCTGGAGTGT GTTTGTCAGT ACAAAAAGGC TCTTTGCTGG AGACTCTGTT CTTTTTATAA GAGATGGAAA GGCGCAACTT CTGTTGGGTA TAAGACGTGC GAATAGACAA CAGCCTGCGC TTTCTTCATC TGTAATATCA AGTGATAGCA TGCACATCGG AGTTCTTGCT GCTGCAGCTC ATGCTAATGC TAATAACAGC CCTTTCACCA TTTTCTACAA CCCAAGGTGG GCTGCTCCTG CTGAGTTTGT GGTTCCTTTA GCCAAGTATA CCAAAGCGAT GTACGCTCAA GTTTCCCTGG GTATGCGGTT TAGGATGATA TTTGAGACTG AAGAATGTGG AGTTCGTCGG TATATGGGTA CAGTTACCGG TATAAGTGAT CTTGATCCAG TGAGATGGAA AAATTCTCAG TGGCGGAATC TTCAGATTGG ATGGGATGAG TCAGCTGCTG GTGATCGGCC CAGTCGAGTT TCAGTTTGGG ACATTGAACC GGTTTTAACT CCTTTCTACA TATGTCCTCC TCCATTTTTT CGACCTCGCT TTTCTGGACA ACCCGGAATG CCAGATGATG AGACTGACAT GGAATCTGCA CTGAAGAGAG CAATGCCATG GCTTGATAAT AGCTTAGAGA TGAAAGACCC TTCGAGTACG ATATTTCCTG GTCTGAGTTT AGTTCAGTGG ATGAATATGC AGCAGCAGAA CGGCCAGTTA CCATCTGCTG CTGCACAGCC AGGTTTCTTC CCGTCAATGC TTTCGCCAAC CGCGGCGCTG CACAACAATC TTGGCGGCAC TGATGATCCC TCCAAGTTAC TGAGCTTTCA GACGCCGCAA GGGGGGATTT CCTCATCAAA TCTCCAATTT AACAAACCAA ACCCGCAAGC CCCAATGTCC CAGTTGCCTC AGCCACCAAC TACGTTGTCC CAACAACAGC AGCTGCAGCA ATTGTTGCAC TCCTCTTTGA ACCATCAGCA ACAACATCAA CAACAACAAC AACAACAGTT GCAGCAGCAG CAACAACAAT TGCAGTCTCA ACAACACAGC AACAATAATC AATCGCAGTC TCAACAACAA CAACAATTGC TGCAGCAGCA ACAACAACAA TTACTGCAGC AACAACATCA ACAACCGTTA CAGCAACAGA CTCAGCAGCA GCAGCAGCAG CAGCTAAGAA CGCAGCCATT GCAATCTCAC TCGCATCACC AGCCACAGCC ACAACAGTTA CAACAACATA AGTTGCAGCA GCAACTTCAG CTTCCGCAGA ATCAGCTTTA CAATGGTCAA CAAGCAGCGC AGCAGCTTCA GGTGCAACAA GTATCTACAC ATCATTTGCA ACCACAATTA GTTTCGGGAT CAATGGCAAG CAGTGTTATC ACGCCTCCGC CCAGCTCCCT TAATCAAAGC TTTCAACAGC AACAACAGTC TAAGCAGCTT CCACAAGCAC ATCACCATTT AGGTGCTAGC ACTAGCCAGA GTAGTGTAAT TGAAACCAGC AAGTCTTCAT CCAATCTGAT GTCCGCGCCG CCGCAAGAGA CACAGTTTCC ACGACAAGTA GAACAGCAGC AGCCTCCTGG TCTCAACGGG CAGAATCAGC AAACACTTTT GCAGCAGAAA GCTCACCATG CACAGGCCCA ACAGATATTC CAGCAGAGTC TCTTGGAACA GCCGCATTTA CAGTTTCAGC TGTTGCAGAG ATTACAACAG CAACAGCAAC AGCAGCAGCA ATTTCTTTCG CCGCAGTCTC AGTTACCACA CCATCAATTG CAAAGCCAGC AGTTGCAACA GCTGCCTCCT CTCTCTCAAG GTCATCAGTT TCCGTCATCC TGCACTAACA ATGGCTCATC GACGTTGCAA CCACCTCAAA TGCTGGTGAG CCGGCCTCAG GAAAAACAAA ACCCACCGGT TGGAGGAGGG GTCAAAGCTT ATTCAGGCAT CACAGATGGA GGAGATGCAC CTTCCTCTTC AACCTCGCCT TCCACCAACA ACTGTCAGAT CTCTTCTTCA GGCTTTCTCA ACAGAAGCCA AAGTGGGCCA GCGATCTTGA TACCTGATGC AGCGATTGAT ATGTCTGGTA ATCTTGTTCA GGATCTTTAC AGCAAGTCCG ATATGCGACT AAAACAAGAA CTTGTGGGTC AGCAAAAGTC CAAAGCTAGT TTAACAGATC ATCAACTAGA AGCATCTGCC TCTGGAACTT CTTACGGTTT AGATGGAGGC GACAACAACA AACAACAGAA TTTCTTGGCT CCAACTTTTG GCCTTGACGG TGATTCCAGG AACAGCTTGC TCGGTGGAGC TAATGTTGAT AATGGCTTTG TTCCTGACAC GTTACTCTCG AGGGGATACG ACTCCCAGAA AGATCTCCAG AACATGCTTT CAAACTATGG AGGAGTGACA AATGACATTG GTACAGAGAT GTCTACTTCA GCTGTAAGAA CTCAATCTTT TGGTGTCCCC AATGTGCCCG CCATTTCAAA TGATCTAGCT GTCAACGATG CTGGAGTTCT GGGTGGTGGA TTGTGGCCAG CTCAGACTCA GCGAATGCGA ACTTATACAA AGGTTCAAGA ACGAGGTTCA GTGGGGAGAT CAATAGACGT CAACCGTTAC AGAGGTTACG ATGAGCTGAG GCATGATCTA GCGCGCATGT TTGGGATCGA AGGACAGCTT GAAGATCCGC AAACATCTGA CTGGAAACTT GTTTATGTCG ATCAAGAAAC CGACATCCTC CTCGTTGGCG ATGATCCATG GGAGGAATTC GTGAACTTTG TTCAGAGCCT TAAGATCCTT TCATCAGCTG AGGTTCAACA GATGAGCTTG GACGGGAACT TTGCCGGTGT ACCAGTTACT AATCAAGCTT GTAGTGGCGG TGACAGTGGC AATGCTTGGA GAGGTCATTA TGATGATAAT TCAGCCACCT CGTTTAACAG GTGAAGGCAG AAGGGATCTC TCACAGACAA AGATTCTTTT TTCTTCGTTT TGTAATATAG CTTCTCTTTG ATAACATGTC TCAAGTTTCC ACTGGGCACT GTAGAGCATT TACCTGTAAA ATATCTTTCA CTAAGTTTAC AAGATGATTT CATTTGATGC GA |
| Length | 4152 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 8360540.. 8365994 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G20730.1 |
| Description | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
| TAIR curator summary | Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. |
| Alias | [ARF7][BIP][IAA21][IAA23][IAA25][MSG1][NPH4][TIR5][AUXIN RESPONSE FACTOR 7][BIPOSTO][indole-3-acetic acid inducible 21][indole-3-acetic acid inducible 23][indole-3-acetic acid inducible 25][MASSUGU 1][NON-PHOTOTROPHIC HYPOCOTYL][TRANSPORT INHIBITOR RESPONSE 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.87298 |
Ahg494201 | binding |
| 9.94987 |
Ahg349401 | Protein of unknown function (DUF1423) |
| 10.0995 |
Ahg473574 | Regulator of Vps4 activity in the MVB pathway protein |
| 12.6491 |
Ahg481400 | EIN3-binding F box protein 1 |
| 18.8149 |
Ahg933960 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 20.199 |
Ahg940649 | |
| 23.4521 |
Ahg477743 | RNA polymerase II transcription mediators |
| 23.622 |
Ahg944801 | monogalactosyl diacylglycerol synthase 1 |
| 28.9828 |
Ahg355042 | pleckstrin homology (PH) domain-containing protein |
| 32.4346 |
Ahg472338 | squamosa promoter binding protein-like 14 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|