| Annotation |
|---|
| Description | jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1 |
| Sequence |
TTGATAATTG AAACATAAGA AACAATCGTC ATAGAAGCAG AAGCAGCAGA GATTCACCTT CTTCTCTTTC TTTCTTTATC TTTCCCTCTC AGAAACAGGA AAATAATTCA AAAAAAAAAA AAAAAAGTCA AGCCAAAACG ATGGCGTTTC ATCACAATCA TCTCTCTCAA GACCTCTCCT TCAATCATTT CACCGACCAA CACCAACCTC CTCCTCCGCA ACCGCCTCCT CCTCCGCCGC AACAACAACA ACATTTTCAA GAAGCCCCGC CTCCTAATTG GCTCAACACA GCGCTTCTTC GTTCCTCCGA TAACAACAAT TTCCTTAACC TCCACACAGC TACCGCTAAC ACCACAACCG CAAGCAGCTC CGATTCTCCT TCTTCCGCCG CCGCTGCTGC TAACCAGTGG CTCTCTCGCT CCTCCTCCTT CCTCCAACGA AACAACAACG CAACAGCCTC CACCGTTGTC GGAGAAGGAA TCGATGATGT CACTGGAGGA GCGGAGACTA TGATTCAGGG AGAGATGAAA AGCGGCGGTG GAGAAAACAA AAACGACGGC GGAGGAGCTA CGGCGGCGGA CGGAGTTGTG AGCTGGCAGA ATGCGAGACA CAAGGCGGAG ATCCTCTCTC ATCCTCTTTA CGAGCAGCTT TTGTCGGCGC ACGTTGCTTG TTTGAGAATC GCGACTCCGG TTGATCAGCT TCCGAGAATC GATGCTCAGC TTGCTCAGTC ACAACACGTC GTCGCTAAAT ACTCAGCTTT AGGCGCCGCC GCTCAAGGAC TCGTCGGTGA TGACAAAGAG CTTGACCAGT TCATGACACA TTATGTGTTG TTACTGTGTT CTTTCAAAGA GCAATTGCAA CAACACGTTC GTGTTCATGC AATGGAAGCT GTGATGGCTT GTTGGGAGAT TGAGCAGTCT CTTCAAAGCT TAACAGGTGT GTCTCCTGGT GAAGGGATGG GAGCAACAAT GTCTGATGAT GAAGATGAAC AAGTAGAGAG TGATGCTAAT TTGTTCGATG GGAGCTTAGA TGTGTTGGGG TTTGGTCCTT TGGTTCCTAC TGAGAGTGAG AGATCGTTGA TGGAAAGAGT TAGACAAGAA CTCAAACATG AACTCAAACA GGGTTACAAG GAGAAGATAG TAGACATAAG AGAGGAGATA TTGAGGAAGA GAAGAGCTGG GAAATTACCA GGAGACACTA CCTCTGTTCT TAAAGCATGG TGGCAATCTC ATTCTAAGTG GCCTTACCCT ACTGAGGAAG ATAAGGCGAG GTTGGTGCAA GAGACAGGTT TGCAGCTAAA GCAGATAAAC AATTGGTTCA TCAATCAGAG AAAGAGGAAC TGGCATAGCA ATCCATCTTC TTCCACTGTC TTGAAGAACA AACGCAAAAG CAATGCAGGT GACAATAGCG GGAGAGAGCG GTTCGCGTAG AAAGAACGAA TATATGATGT GAATTGGGAG GTGGAAGATG GGATTCAAAT GCAGGGTTTA GGGGTTTAAA GTTTGAGAAA TTGATGGAGG AGTTTGGGTT ATACAGAGAG AGAGGGGACA GTATTAGAAA GTAACTTTTT GTGCAATTAC ATAGTACGTA GTTTGGTTAT GTGATGCCCA TATATTTTAT TAAGTAGTAC ACAAACCAAA AAAAAAAAAA AAGATGAAAA AAGAAGATTC AGGCTTTTGT TTAATGTTTT TTGTTTGTTT GTTTGTCTGC ATGAGTTTTT AGTCATGAAC CATCAGATAA TCATCATCAT CATCATCGTA ATATATCTTG TGAATAAAGT TAGTGAGAGG AGAACATTGG GATGCACAAG TTTTCT |
| Length | 1816 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 10586933.. 10589469 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G25220.1 |
| Description | KNOTTED1-like homeobox gene 3 |
| TAIR curator summary | A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia |
| Alias | [KNAT3][KNOTTED1-like homeobox gene 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.583 |
Ahg484801 | Transmembrane proteins 14C |
| 14.1774 |
Ahg496641 | FK506-binding protein 12 |
| 19.4422 |
Ahg945086 | profilin 2 |
| 21.6333 |
Ahg486249 | |
| 25.3969 |
Ahg928793 | Cytochrome b-c1 complex, subunit 8 protein |
| 26.8328 |
Ahg941626 | Protein of unknown function (DUF581) |
| 27.2947 |
Ahg496924 | succinate dehydrogenase 1-1 |
| 27.313 |
Ahg903921 | SERINE CARBOXYPEPTIDASE-LIKE 49 |
| 28.2489 |
Ahg488497 | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
| 28.3901 |
Ahg923636 | RNA-binding (RRM/RBD/RNP motifs) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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