| Annotation |
|---|
| Description | jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3 |
| Sequence |
AACCGCCTTT TATATAATCG CACTCACTCA GAGAAACAGA GAAGAAGAAA AATGGCGTTG GCTCTTCGTA GACTCTCGTC TTCCGTTAAG AAACCGATCT CGCTTCTTTC TTCTAATGGC GATTCTCTCC GTTTCATGTC GTCTTTATCA TCCTCAGCTA TGGCGGAGTC CGAGAAATCT CGTTCCAGTT GGATTAAGCA ATTGAATGGA TCTCTAGAAG AAATCGATCC CGAAGTTGCG GATATTATCG AATTAGAGAA AGCTAGGCAA TGGAAGGGAT TTGAACTTAT ACCTTCAGAG AATTTCACCT CTCTCTCGGT TATGCAAGCG GTTGGTTCGG TTATGACTAA TAAGTATAGT GAAGGATATC CTGGTGCTAG ATACTATGGA GGAAATGAGT ACATTGACAT GGCTGAGTCA TTATGTCAAA AACGCGCATT AGAAGCTTTT CAGTTAGATC CTTCGAAATG GGGAGTCAAT GTGCAGTCTT TATCAGGATC ACCAGCTAAC TTCCAAGTTT ACACTGCATT GTTAAAGCCT CATGAAAGAA TCATGGCACT TGATTTACCT CATGGTGGAC ATCTTTCTCA TGGTTATCAG ACTGACACGA AGAAAATATC GGCTGTATCC ATCTTTTTTG AGACAATGCC ATACAGATTG GATGAGAACA CTGGTTACAT TGATTACGAT CAGCTAGAAA AAAGTGCGGT GCTTTTCAGA CCCAAACTTA TTGTTGCGGG TGCAAGTGCT TATGCTCGTC TATATGATTA TGCACGTATT CGTAAGGTTT GTGACAAGCA AAAGGCAGTT ATGCTGGCTG ATATGGCTCA TATTAGTGGG TTGGTTGCTG CTGGCGTTAT TCCTTCTCCT TTTGAGTATG CAGATGTTGT TACAACTACA ACTCACAAAT CGCTTCGCGG TCCTAGAGGG GCTATGATAT TCTTTAGGAA GGGGTTAAAA GAGATTAACA AACAAGGGAA AGAGGTCATG TATGACTATG AGGACAGAAT TAACCAAGCT GTTTTTCCTG GACTGCAAGG TGGTCCACAT AATCACACTA TAACGGGTCT AGCAGTTGCT CTGAAGCAGG CGAGAACACC TGAGTATAAG GCCTACCAGG ATCAAGTTCT CCGTAATTGC TCAAAGTTTG CTGAGCTGGG TATAAGACCT ACTTCTTTGC TTGCGAAAGG ATATGATTTA GTGTCTGGAG GCACTGAGAA TCATTTAGTT TTGGTGAATC TGAAAAACAA GGGAATAGAT GGATCAAGAG TGGAAAAAGT ATTAGAATCA GTACATATTG CAGCAAACAA GAATACTGTT CCTGGTGATG TTTCTGCCAT GGTTCCAGGT GGCATCCGTA TGGGAACACC AGCCCTCACA TCAAGAGGAT TCATTGAGGA AGATTTTGCA AAAGTGGCGG AGTATTTTGA TTTAGCCGTC AAGATAGCCT TAAAGATCAA GGCAGAGTCT CAAGGAACAA AGTTGAAGGA CTTTGTAGCA ACAATGCAAT CAAATGAGAA ATTACAGTCA GAGATGGCAA AGTTGCGTGA GATGGTAGAA GAATATGCGA AGCAATTCCC AACAATTGGG TTCGAGAAAG AGACGATGAG ATACAAGGAG TAGTTTCAAT CAAATGGATT GACACGTTTC CACATCTCCG AGATGCTTTA GGTACCTAAA ACACTTAGTT ATACGTAAGC TTATTCTCTG AAATATTTGA GGGAACTCAT TATGGAGCGA CTATGCAACT TTTTGCAGTG ATCTTGGACC AGAGGCGAAG TATCTCGGAA ACTAAAGTTG AACTCGAAAA ATGGCACTCC AGTGTTGTCT TTATCTTTGC TTCCTTAAGT TGGTTCATCA ATTTAAATAA TTGTATTGCA ACAGTTTTAA GGTTGCTATA GCATAAACGA TGCAGCTTTG |
| Length | 1920 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 11539560.. 11543478 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G26780.3 |
| Description | serine hydroxymethyltransferase 2 |
| TAIR curator summary | Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1. |
| Alias | [SHM2][serine hydroxymethyltransferase 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg478773 | Ribonuclease III family protein |
| 6 |
Ahg491840 | Mnd1 family protein |
| 6.7082 |
Ahg936241 | Protein of unknown function, DUF617 |
| 8.48528 |
Ahg479567 | |
| 14.8324 |
Ahg344719 | CCCH-type zinc fingerfamily protein with RNA-binding domain |
| 21.6333 |
Ahg491433 | Homeodomain-like protein |
| 22 |
Ahg493685 | beta glucosidase 42 |
| 22.2486 |
Ahg496342 | inositol polyphosphate kinase 2 beta |
| 23.2379 |
Ahg478983 | Leucine-rich repeat (LRR) family protein |
| 26.9815 |
Ahg496659 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|