Detail



ID : Ahg344719

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|344719|fgenesh1_pg.C_scaffold_4001061
Sequence
ATGGCGCATA GAATACTGAG AGATCACGAG GCTGATGGAT GGGAACGTTC TGATTTCCCA ATCATCTGCG AGTCTTGTCT CGGTGACAAT CCTTACGTGA GAATGACAAA GGCAAATTAT GATAAGGAAT GCAAGATCTG TACTCGGCCT TTCACGGTAT TCAGGTGGCG ACCTGGCCGA GATGCGAGAT ACAAGAAGAC TGAAGTTTGT CAGACATGTT GCAAGCTGAA GAATGTGTGT CAAGTTTGTC TCTTGGATCT TGAGTATGGT CTTCCAGTTC AGGTCAGAGA CACGGCGCTC AACATTAGTA CTCATGATTC TATCCCAAAA AGTGATGTGA ACCGCGAGTT TTTCGCTGAA GAGCATGATC GAAAGACGAG AGCTGGACTA GATTATGAGT CTTCTTTTGG GAAGATTCGA CCTAATGATA CCATCCGTAT GCTTCAAAGG ACAACGCCAT ATTATAAAAG GAATCGAGCA CATATTTGTA GTTTCTTCAT TAGGGGAGAG TGTACAAGAG GTGCTGAGTG TCCATACCGT CATGAGATGC CTGAAACAGG GGAGTTATCC CAGCAGAACA TTAAAGACCG TTACTATGGT GTAAATGATC CAGTTGCGTT GAAGTTACTT GGCAAGGCTG GTGAGATGGG CACTTTGGAA TCTCCAGAGG ATCAAAGCAT CAAAACGCTT TATGTTGGTG GGCTAAACTC GAGAGTCCTT GAGCAAGACA TTCGCGATCA ATTCTACGCC TATGGAGAAA TCGAATCCAT TAGAATCTTG GCTGAGAAAG CATGTGCGTT TGTCACATAC ACAACCCGAG AAGGCGCAGA GAAAGCAGCA GAAGAGCTCA GTAACAGGCT AGTTGTCAAC GGTCAGAGGC TAAAACTCAC ATGGGGAAGA CCTCAGGTTC CCAAACCTGA TCAAGATGGT TCTAACCAAC AGGGCAGTGT GGCTCATAGT GGTTTACTAC CTCGAGCAGT TATATCTCAG CAACAGAATC AACCTCCAAT GCAGCAATAC TATATGCACC CACCACCACC ACAACCTCCT CATCAAGACA GACCCTTTTA CCCATCAATG GACCCTCAGA GAATGGGTGC AGTCATTTCG TCCCAAGACA GCGGTTCAAG CACCAGTGAC AACAGAGGAG CTTCTTCTTC TTCTTACTCG ATGCCACCAC ATGGCCACTA TCCGCAGCAC CAGCCATACC CACCACCACC ATATGGAGGA TATATGCAGC CACCTTACCA GCAGTATCCT CCTTACCAAC ATGGCCCACC GCAAGCTGCT CATCCTTCCC CGCAACAACC GGTTCCTGGT TCAAGGCCCA ATGCTCCTCC TCCAAGTTCA GTCGCTGCTC CACCACCTGA CTCTGTGTCT GCAGCACCTT CATGA 
Length1395
Protein Sequence
Protein Residue
Map Locationscaffold_4: 12959869.. 12961903
Download Sequence
A.thaliana
AGI-codeAT2G29580.1
DescriptionCCCH-type zinc fingerfamily protein with RNA-binding domain
TAIR curator summary
Alias[MAC5B][MOS4-associated complex subunit 5B]
Gene coexpression
MR
MR Locus Description
2.44949 Ahg489219 Transmembrane CLPTM1 family protein
4.79583 Ahg474459 phosphoenolpyruvate carboxylase 1
6.9282 Ahg317848 NAC domain containing protein 52
6.9282 Ahg325480 vacuolar protein sorting-associated protein 20.2
9.53939 Ahg942536 Transducin family protein / WD-40 repeat family protein
13.2288 Ahg478143 PHD finger family protein
13.8564 Ahg476779 O-fucosyltransferase family protein
14.8324 Ahg489509 serine hydroxymethyltransferase 2
19.2873 Ahg943609 MAP kinase 4
20.9284 Ahg928298 Rab escort protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression