| Annotation |
|---|
| Description | jgi|Araly1|490166|fgenesh2_kg.6__3300__AT4G05160.1 |
| Sequence |
TCCTCCGAGA TCGGAAGAAA TGGAAAAATC CGGCTACGGC AGAGACGGAA TTTACCGATC ACTACGTCCG ACGCTAGTTC TTCCCAAAGA TCCAAACACA TCGTTAGTCT CTTTCCTCTT CCGTAATTCA TCGTCTTACC CATCAAAGCT TGCTATCGCC GATTCCGATT CCGGTGACTC CTTAAACTTC TCTCAGCTCA AATCCGCCGT CGCTAGACTC GCTCACGGGT TTCACCGTCT AGGTGTTCGT AAAAACGACG TCGTGTTGAT CTTCGCTCCG AATTCTTACC AATTCCCTCT CTGTTTCCTC GCCGTAACTG CAATCGGCGG CGTTTTCACC ACCGCGAATC CTCTTTACAC TGTGAATGAG GTTTCTAAAC AGATCAAAGA TTCGAATCCG AAGATTATCA TCTCTGTTAA TCAATTGTTT GATAAAATCA AGGGTTTTAA TCTTCCCGTT GTTCTACTTG GATCTAAAGA TTCCGTACAG ATTCCTCCGG GATCGAATTC GAAGATTCTT AGTTTCAATG ACGTTATGGA GCTCTCAGAG CCAGTTTCTG ATTACCCTTT CGTTGAGATT AAGCAATCAG ATACTGCTGC ATTGTTGTAT TCATCAGGAA CTACAGGAAC AAGCAAAGGT GTTGAATTGA CTCATGGGAA TTTCATTGCA GCTTCGTTGA TGGTGACGAT GGATCAAGAT CTTATGGGAG AGTATCATGG CGTGTTCTTG TGTTTTCTAC CAATGTTTCA TGTTTTTGGG TTGACTGTGA TTACTTATTC TCAGCTTCAG AGAGGGAATG CTTTGGTCTC TATGGCGAAA TTTGAGCTTG AGTTGGTGCT TAAGAACATT GAGAAGTATA GAGTCACTCA TCTTTGGGTT GTTCCTCCTG TGTTCCTTGC TCTTTCCAAG CAAAGTATTG TGAAAAAGTT TGATCTTTCT TCACTTAAGT ACATTGGATC AGGAGCTGCT CCTCTTGGGA AAGATTTGAT GGAGGAGTGT GGAAAAAACA TCCCTAATGT TTTGCTTATG CAGGGCTATG GAATGACTGA AACGTGTGGA ATTGTCTCTG TGGAAGACCC GAGACTCGGG AAACGGAACT CTGGTTCAGC TGGAATGCTT GCTCCAGGAG TTGAAGCTCA GATAGTTAGT GTAGAAACTG GAAAATCTCA GCCTCCAAAT CAACAAGGCG AGATCTGGGT TCGAGGGCCA AACATGATGA AAGGGTATCT AAATAACCCT CAGGCTACTA AAGAAACAAT AGATAAAAAA GGTTGGGTAC ATACCGGAGA TCTTGGATAT TTCAACGAAG ATGGTAACCT TTATGTTGTT GATCGACTCA AAGAACTTAT CAAATACAAA GGCTTCCAGG TTGCTCCAGC TGAGCTAGAA GGTCTTCTTG TATCGCATCC TGAAATACTA GATGCTGTCG TTATCCCATT CCCTGACGAA GAAGCAGGTG AAGTTCCAAT TGCATTTGTT GTTCGATCAC CAAATAGCTC AATTACAGAG CAAGATATTC AAAAGTTCAT TGCCAAACAG GTCGCTCCTT ACAAAAGATT ACGACGAGTG AGCTTCATCA ACACAGTTCC AAAATCTGCT GCTGGTAAAA TCTTGAGAAG AGAGCTTGTT CAGCAAGTAC GATCCAAGAT GTGAAGAAGA ATCTCGGAGA CCGAAGATCA GAATCTGTGT GTTGCCTCTT TCCTTTCACC ATATTTATGT ACCACTTCAA ATTAAACGGT TACACAAACC ACAAAAGTGA ATAAATAATC CAATACCATA GTCAATACTC AATACACTTT TTCTTTCATT TG |
| Length | 1812 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 21458977.. 21461367 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G05160.1 |
| Description | AMP-dependent synthetase and ligase family protein |
| TAIR curator summary | Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. |
| Alias | |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.583 |
Ahg476691 | BEL1-like homeodomain 3 |
| 31.9844 |
Ahg897649 | RING/U-box superfamily protein |
| 33.8231 |
Ahg495156 | CLPC homologue 1 |
| 41.9762 |
Ahg938307 | Major facilitator superfamily protein |
| 50.4975 |
Ahg492373 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein |
| 52.0961 |
Ahg491315 | dynamin-related protein 3A |
| 53.1883 |
Ahg478682 | multidrug resistance-associated protein 3 |
| 55.2087 |
Ahg474488 | mitogen-activated protein kinase kinase kinase 3 |
| 67.3498 |
Ahg919257 | UDP-glucosyltransferase 75B1 |
| 71.8262 |
Ahg939877 | Duplicated homeodomain-like superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
|
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| Growth Chamber expression |
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