Detail


ID : Ahg495622

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|495622|fgenesh2_kg.8__1438__AT5G55390.1
Sequence
ATGGCGTTCG TTGACGATGA TGAAGAGGAA GACTTCTCTG TTCCTCAATC AGCTTCGAAT TATTATTTCG AAGATGACGA TAAAGAGCCT GTTTCGTTTG CTCGTCTCCC AATTCAATGG AGCGGCAAGG ACAAAGTTGA TGGAAGTGGT TTAGGTTTTT ACTTGCGAGG AAGATCTGAT AATGGGCTTT TGCCTCTGCA TAAGCTTGTT AAGGCTTGGA GATTCGATCT TTCGAACTTT AGACCAGAGG TTTCTGTTCT TACAAAGGAT AATATCTGGA TTAAGCTTGA GGAACCGAGG AAAAGCTATG GGGAATTGAT AAGAACTGTT TTTGTAACGT TGCACTCCAT TCAGTTTCTT AGGAGGAATC CCCAAGCCTC GGAGAAATCT CTCTGGGAGA AATTAACTAA AAGTTTGAGG TCATATGATG TGAAGCCATC GCAGAATGAT TTGGTGGATC ACATTGATTT AATTTCTGAA GCTGCAGAAA GAGATGTAAA TTTGGGGAAA TCAAAGTTTA TACTTGCATT TCTCACAAAA AAGCCTACCA AAAGGAGATT ACCTGACGAG GACAATGCAA AGGATGATTT CATAGTTGGA GATGAGGACA CTTATGTAGC TTCCGATGAA GATGAATTGG ATGATGAAGA CGATGATTTT TTTGAGTCTG TTTGTGCAAT ATGTGACAAT GGTGGCGAGC TTTTGTGTTG TGAAGGAAGC TGCCTGAGAT CATTTCATGC TACCAAAAAA GATGGTGAAG ATTCACTTTG TGATTCTCTT GGCTTAAACA AGATGCAAGT GGAAGCAATT CAGAAATACT TTTGCCCAAA CTGTGAGCAT AAGATACATC AATGCTTCAT TTGCAAGAAC CTTGGCTCTT CTGATAACTC CACTGGGGCA GCAGAGGTTT TCCAATGCGT GTCAGCCACC TGCGGCTACT TTTACCATCC TCGTTGTGTC ACAAGACGGC TACGTTTAGG AAATAAAGAT GACTCTGAAG CACTAGAGAG ACAAATCATT GCTGGAGAGT ATACATGCCC ACTGCACAAA TGCAGTGTCT GTGAAAACGG AGAGGTTAAG ACAGACTCTA ATTTGCAATT TGCTGTTTGC CGGCGTTGTC CAAAGTCCTA CCATAGAAAA TGCCTGCCGC GGGAAATTTC TTTTGAAGAT ATTGCGGACG AGGATATATT TACTAGGGCA TGGGACGGAC TCTTGCACAA CCGTGTTCTC ATATATTGCC AAGAACATGA GATAGATGAA GAACTCCTGA CACCACTTAG AGACCATGTT AAGTTCCCTT TCACCGAAGA GAAGAAGGTC TTCATAAAAG AGCAAAGAAG GATACTGGAA TCACATGTGG GACGAGATAA AGCAAGACCT AAGGTTAAGG ATCCTGCCTT ACAAGATACT TGTGGAAAAG CTTCTGATAA ATCCTTTAGA AGTTCGTTTC CTTCTTCAAA AGATGGTTTC TCCACAAAGA AGCATGGATT AGTTTCATCC GTACCAGACC ATTCGAGGAA ACGAAAGGAT ATTGATCCAT CCATAAAGCA TAAAATGGTT CCACAAAAAT CCCACAAGAT GATGGAAAAC TCCCGTGAAG CTGGCAAAAA CAGGCTGGGA GTAAAAGAGA CACGTGAATC TGGTAAAAGC AAGGTTTCAC TGGGTGAGAG GTTGTTTAAT TATATCCAGG AACCTAACCT AGTAAAGCCT GGGCGCGTGA TTCCTGTTGA TAGCAAGCAC AATAAGACTG ACTCAATTGC TTCCAAGGAG CCAGGAAGTG AAATTCCTAC ATTAGACAAC GACTCTCAAA GGAGGCTCTT GGCGGTGATG AAAAAAGCTA CGGAAGAAAT AACTATGGGT ACTATGTTAA AGAAATTTAA AGTTCAATCT ACTATGAATA CAAACTCCAC AAGGAATGTT GTGGACAAGA CAATCACTAT GGGGAAGGTA GAGGGCTCAG TTCAGGCTGT CAGAACAGCG CTAAAAAAGC TTGAGGAAGG AGGAAACATT GAGGATGCAA AAGCAGTTTG TGAGCCAGAG GTTCTGAGCC AAATCCTCAA GTGGAAGGAT AAGCTCAAAG TTTACCTTGC TCCTTTTCTC CATGGTGCAC GCTACACCTC CTTTGGTCGT CATTTTACTA ATCCTGAAAA ACTTCAACAG ATTGTTGATA GGCTGCATTG GTATGCAGAA GATGGTGATA TGATTGTCGA CTTCTGTTGT GGTTCTAATG ACTTTAGCTG TCTGATGAAC ACGAAGCTTG AAGAAACGGG GAAGAAGTGC TTATATAAAA ATTACGATCT TTTTCAAGCA AAGAATAATT TCAATTTTGA GAGAAAGGAT TGGATGACTG TAAGCAAAGA TGAGTTGGAA CCAGGTTCAA AGCTGATTAT GGGGCTAAAT CCACCATTTG GAGTCAATGC TTCTCTTGCA AACAAGTTTA TTACCAAGGC TCTTGAGTTT CGCCCAAAGA TTCTCATCCT CATTGTTCCT CCCGAGACTG AAAGGTTGGA TAAAAAGAAG TCATCATATG TGCTTATATG GGAGGATAAG ACGTTCCTAT CTGGAAATTC ATTTTACCTG CCTGGTTCTG TCAATGAAGA AGATAAGCAA TTGGAAGACT GGAACATTGT TCCTCCGCCA CTTTCTCTCT GGAGTCGGTC CGACTTTGCA GCCAAGCACA AGAAAATAGC GGAAAAGCAT TGCCATTTGT CTAGGGATGT GGGGAGCTCA AAGTTAAAGA TAGTTGAAGA AGAAGCAAAA GCATCTTTGC ATCCTCTTGG ACCTTCTGAT GGCATGTGTG ATGATATTCC TGTGGAAAAG GATGAACTTG AGGTAGCTGA ATGTGTTCAT AAAATTTTAC TCTCTGAGAA AATCGAAACA CCGGAAGCTG TAGCACGTGT ACATCAGTCA GATCACTTGT TACAGAGAAG TCAGCTGAAA AGGAAGGAAA AGACCAAAGA CTACTCCGGT AGGAAGCGTG GGAAGTCTGT GGATTCTAAT AATGTGGATT GGAAGAGCAA TGACATGGAA GAGGATCGAG GAGAGTTGAC TAGAGCACCG GAGAGCATCA AAGTAAAAGT TCCCGAAATG ACATCTGATT GGCAGAGTCC TGTTAGGTCT TCCCCAGATG ATATATATGC TGTCTGCACA TCAATTTCCA ATACAACACC TCAAAGATCT CACGAGTCTG TAGAAGCATC TCTGCCTGCA ATAACAAGGA CAAAAAGTAA CTTGGGAAAG GATATTAGAG AACCTGATTG TAAAGTGCAG GGCAGTGGAA AACCTGAAGT GACGCGGAAT AGGTCTAGCT CTGTAAGAAC TTCTAGAGAG GACATCTACA CTGTTCGTCC ATCGCCAGAA AATACGGCTC AGAAACCGTT TGAAGCTTTT GAACCATCTT ATGGTGCAGG TTTGTCCCAT TTCGACGATG GTCTTGCTGC TAGGTATGGT TTTGGTGGAG GCTACAGAAT GCCAGATCCT CCTTTCCTAC CGGATCAGTT TCCATTGAGA AATGGTCCTA ACGAGATGTT TGATTTCCGA GGATATTCAG ACCTCGATAG AGGGGTTGGT CAAAGAGAGT ATCCACAGCA GTACGGTGGG CACTTGGACC CCATGTTAGC TCCTCCTCCA AATCTGATGG ACAATGCATT CCCATTGCAA CAACGTTATG CGTCTCATTT CGATCAAATG AATTACCAGA GGATGAGCTC TTTCCCACCT CCGCCTCCAA TGCAACCTAG CGGACACAAT CTCCTAAATC CTCATGGTTT TTCACTGCAA CCGCCACCAC CTAGTGACTT CGAAATGAGT CCGCTGGGTT TTGCCCCTGG GCCGAACCCG AACTACCCTT ATATGAGTCG ATCTGGCGGT TGGATTAATG ACTAGACCAG CAGTCATTAT CCTTGTAGTT GCAACATTAG TAGTTCGATT GATCTTTTGT GTCTGACTCT ACGAAATTGT AGGAAGAATA GAAGAAATCT AGAACTTTTC TCTGCCACTC ATGCCTAGCT AGTGGGCCTT TTGGCTGTTT AATTAATATA AAAGAAAAAG AAGCCAGCAT CTTTTCTCTT
Length4070
Protein Sequence
Protein Residue
Map Locationscaffold_8: 15994997.. 16001520
Download Sequence
A.thaliana
AGI-codeAT5G55390.1
DescriptionENHANCED DOWNY MILDEW 2
TAIR curator summaryEncodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.
Alias[EDM2][ENHANCED DOWNY MILDEW 2]
Gene coexpression
MR
MR Locus Description
2.23607 Ahg471824 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
12.4097 Ahg490606
13.2288 Ahg477260 CASC3/Barentsz eIF4AIII binding
13.5277 Ahg947489 Lung seven transmembrane receptor family protein
20.9045 Ahg479509 RING/U-box superfamily protein
21.3542 Ahg478776 transmembrane nine 7
23.9165 Ahg484506 Cytochrome C1 family
24.1454 Ahg485391 Protein of unknown function (DUF1162)
24.454 Ahg948327 cullin4
26.7395 Ahg928242 BTB-POZ and MATH domain 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression