| Annotation |
|---|
| Description | jgi|Araly1|495631|fgenesh2_kg.8__1447__AT5G55480.1 |
| Sequence |
GGTCGAAGTT GGTGAAGTCG CCGCCGGGAT AACTCAGGTT TCTCACTGAT GCGAGATAAT CCAACAATGC ATGGCTTACA AGCTTCAAAG TTTCTTCTTT TAGCTCTCAT TTTGATCCAC TTGCTATCTA CTCAACTCTT TGCTCAAAGA TCTAAAAGCC CATGGCAGAC ACTCACTGGA GATGCTCCTC GTATCATTGC TCGTGGTGGG TTTTCTGGGT TGTTGCCAGA TTCAAGTGTC GATGCTTATA GTTTTGTATC GCAGACTAGT GTTCCTGGTA CTCTTCTTTG GTGTGATGTG CAACTAACGA AAGATGCAAT TGGGATTTGC TTCCCTGATG TGAAAATGAT GAATGCTTCT CATATTCAAG ATGTTTACCC TAAACGGAAG AATTCTTACT TGCTTAATGG AGTCCTTACT CAGGATTGGT TCACCATTGA TTTCAACTTC AAGGATTTGA ATACCGTTTT CTTGAAACAA GGAATATTAT CGCGGTCAGA TGCATTCGAA GGAAACAATT ACGCGATATC AACAGTTAAA GATATATCTA CGCAGTTAAA ACCTGAGGGT TTTTGGTTAA ATGTTCAGCA CGACGCATTC TATGCTCAAC ACAATCTGAG CATGAGCAGC TTTCTGCTAT CAATTTCCAA AACTGTGATT ATTGACTATC TCTCTTCCCC TGAGGTGAAT TTCTTTCGGA ACATTGGTAG CCGTTTTGGA CGCAAGGGGC CAAAGTTTGT GTTCAGGTTT CTCGAGAAAG ATGATGTTGA GGTGTCAACC AACCAAACCT ATGGATCTCT TGCGGGAAAC CTAACTTTTG TCAAGACGTT CGCTTCAGGA ATTCTTGTTC CCAAATCTTA CATATGGCCG GTCGAAAGCC AATACTTGCT TCCCCATACA TCCTTTGTTC AAGATGCTCA TAAAGCAGGA TTAGAAGTAT ATGCATCAGG TTTTGCAAAC GACTTTGATC TTGCATACAA CTACAGTTTT GATCCATTGG CCGAGTACTT ATCTTTCGTG GACAATGGAG ATTTCTCCGT GGATGGCGTG CTTTCTGATT TTCCACTTAC AGCATCTTCA GCTGTTGACT GCTTCTCCCA TCTTGGAAGT AATGCTTCAT CACAAGTGGA TTTTCTTGTT ATATCCAAAA ATGGAGCAAG TGGAGACTAC CCTGGCTGTA CTGACTTGGC CTATACAAAG GCTATCGAAG ATGGTGCTGA TGTTATTGAT TGTTCTCTTC AAATGTCATC AGACGGTATT CCGTTTTGCT CAAGTTCAAT TAATCTTGGG GATAGCACAA ACGTTGTCCA AAGTCCTTTC AGAAACCGTT CTACAACTGT TCCTGAGATC GGCTCACTTC CTGGAATATA CAGCTTTAGT CTGGCATGGT CTGAGATTCA GACATTGAGA CCTGCTATTG AAAACCCCTA CAGCAGGGAA TTCACTTTGT TTAGGAATCC AAGGGAGAAA AGTTCCGGGA AGTTTGTTAC GCTTTCTGAT TTCTTGAACT TGGCAAAAAA CTCCAGCTCT CTCGCCGGTG TTTTGATCAG CGTGGAGAAT GCAACATACC TGAGAGAGAA GCAAGGGCTC GACGCTGTTA AGGCAGTTCT CGATACACTC ACAGAAGCTG GTTACAGCAA CAAGACAACA ACCACAAGGG TTATGATTCA GTCAACTAAC AGCTCAGTCT TAGTTGAATT CAAGAAACAG AGCCGGTACG AGACAGTGTA CAAAGTCGAA GAAGTCATCC GCGACATCCT CGACTCTGCA ATCGAAGACA TTAAGAAATT TGCGGATGCT GTTGTCATTA GAAAAACATC AGTCTTCCCC ACCAGCGAAA GTTTCACCAC TGGACAAACT AAACTAGTGG AGAGGCTGCA GAAGTTTCAG CTTCCCGTTT ACGTTGAAGT GTTCCGGAAC GAGTTTGTTT CTCAACCATG GGATTTCTTC GCCGATGCAA CTGTCGAGAT AAACTCGCAT GTTACTGGAG CTGGTATCAA TGGAACAATC ACTGACTTCC CTCTCACAGC CGCGAGATAC AAAAGGAACT CGTGCTTGAC CCGCAAAGAC CCGCCTCCTT ACATGATCCC AGTTCAGCCT GCTGGCCTCT TAACCATCGT GAGTCCTGCT TCTTTACCTC CAGCCGAAGC ACCAAGCCCA GTTTTCACAG ATGCTGATGT CACTGAACCA CCATTACCTC CAGTCACAGC CAGAGCCCCA ACCACCACCC CTGGACCACA GTCAACAGGT GAAAAGACTC CCAACGGACA CACCCGAGTC GCTCAATCTC TTCTTCTTTC TGCATTTGCT ACGGTTTTTG CCTCTCTTCT ACTTGTGTGA TCGCATTGAT CCTGTCACCC GCGCCAGTAG AATTTCTTTG TGAGATTGAT TGAGTCCTCA GGAAATTTTT TTCCTCCTAA CAGTTCTTGA GATTCTTTGC AGTGATGAGT TTCTTGTCTG TTCATATTCT TCGTTATCTT TGTTAATTTC CGGCCAAAGA AGTAAATTCT TGGACGTAAA TTTGTATCAT TGTTGTAACA TTAATCACTG TAATCTTCT |
| Length | 2559 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 16018442.. 16022400 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G55480.1 |
| Description | SHV3-like 1 |
| TAIR curator summary | Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. |
| Alias | [GDPDL4][GPDL1][SVL1][Glycerophosphodiester phosphodiesterase (GDPD) like 4][glycerophosphodiesterase-like 1][SHV3-like 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 11.1355 |
Ahg472662 | MLP-like protein 423 |
| 15.2971 |
Ahg487523 | Eukaryotic aspartyl protease family protein |
| 16.8523 |
Ahg485285 | IQ-domain 21 |
| 20.2978 |
Ahg477690 | Li-tolerant lipase 1 |
| 24.7386 |
Ahg470654 | Fatty acid desaturase family protein |
| 27.9285 |
Ahg480375 | arabinogalactan protein 9 |
| 28 |
Ahg496451 | tubulin beta chain 2 |
| 30 |
Ahg480107 | FASCICLIN-like arabinoogalactan 7 |
| 35.5949 |
Ahg480193 | O-Glycosyl hydrolases family 17 protein |
| 35.9166 |
Ahg945946 | SKU5 similar 4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|