| Annotation |
|---|
| Description | jgi|Araly1|495640|fgenesh2_kg.8__1456__AT5G55540.1 |
| Sequence |
ATGGAATCAG AGCCAGACCA AAGCTTCAAA GACCTCTCAT GGTTTCTTCA AGCAATCAAA GACCCACAAC AAACTTGCTT CAATCTTCAA ACCCTATCTT TCTCCTCGTA CGGAAAAACC ACGCATTGTC AGTTAATAAC AGAGAGCTCC ATGAACATCA ACGTCACTAG AGACAACCTC ACTTCACTTT CCCAGATCTT CATCGAGCTA GCAACATCCT TAGAGACGCA GACATCTCTC AGGAACCTGG AATTCGAAGG AATCTCTTGG GAAATCGAGC TGTTGCAGAG CCTGGGTTTG TTGTTAGACA ACACCTCGAA GATAAAGCAG CTTGCTTTCA GAAAGAACAG GTTTAGTGAA CAATGTCTCA ACGAGCTCTC AGAGATTTTG AAAAGAAACA GTTTTTTGAA AGAGGTTATG TTCTCAGAGT CGAGAATTGG ATACAGAGGA GCTACGCTTC TTGGATCGGC TCTCCAAGTT AACGATTCGT TAGAGGAATT GCAGATTTGG GAAGACTCAA TTGGGTCAAA AGGAGCTGAA GAACTCTCCA AGATGATTGA AGTGAACTCA AGTTTGAAAC TTTTCTCCAT TTTCGACTCG AGTCCTTTCA CTGCCACGCC ATTGATATCT GCTGTTTTGG GTATGAACAG AGAAATGGAG GTTCATGTTT GGAGTGGAGA TCACAAACGA GATAGAAGCA CAAAGCTTGT TGAGTTCTTG CCTGAGAGCA ACACTCTGAG GATTTACCAG ATTGACATTT CTGGTTCTTG CAGAGTCGCT GCAGCCTTGG GGATGAACAC AACCGTGAGG GCTCTAGACA TGACGGGTGC GAAGCTGAAT TCGCGGTGGG CGAAGGAGTT TAGATGGGTT TTGGAACAGA ACAAGACTCT TAGAGAAGTG AAACTTTCGA AAACCGGTCT TAAAGACAAA GCGGTTGTTT ATGTTGCAGC TGGACTTTTC AAGAACAAGA GCTTGCAGAG TTTGTATGTT GATGGAAATC GGTTTGGAAG CGTTGGTGTC GAGGATTTGC TTTGTCCATT GAGTAGATTC TCTGCTCTGC AATTACAAGC TAACATCACA TTGCGGTCAA TTGTGTTTGG AGGTTCCAAG ACAAAGATTG GAAGAGATGG ACTTACCGCG GTTTTAAAGA TGGTGACAAC AAATGAGACT GTGGTTCATC TTGGGATTCA CGACGATGCG AGTCTGGGAC CTGATGATTT CATACATATC TTCAAGACCT TGCAGAAGAA CTCGTCTATA AGACGGTTTT CGTTACAAGG CTGCAAAGGG GTAAGAGGTG ATAGAGTATT GGAGGCAATC ACAGAGACAT TGCAGATTAA TCCATTGATT GAGGAAATTG ATTTAGCGAG AACTCCGCTT CAAGATTCAG GGAAGGCAGA TGAGATTTAT CAGAAGCTGG GACACAATGG TAGGAAGATA GATGAAGCAG AGACGGATGA TTCACTCAAG GATATGCCAC TTACTGAGCC AAAGAGCATT AGAGCTTTCC TCTGTGGACA AGACTATGCA GGAAAGACAA CACTCTGCAA CTCTATACTG CAAAGTTCCT CTTCTTCGGG TTTTCCGTAT GTGGAGAATG TGAGAACTTT GATGAATCCT ATGGAGCAAG CGGTTAAAAC AGTTGGTGGG ATGAAAATAA AGACATTCAA GGACGAGGAG ACAAAGATTT TGATGTGGAA TCTTGCGGGG CAGCACGAGT TCTTTGCCCT TCATGATCTT ATGTTTCCAA GCCCATCTCT CTTCTTGATC GTATTGAGCT TGTTTAGGAA ACCGAGCAAT AAAGAACCCA AAACACCAGC AGAAGTAGAA GAAGAGCTTC AATACTGGCT TAGATTCATC GTTTCCAACT CGAGAAAAGC GGTCCAACAA TGCATGAAAC CGAATGTCAC AATTGTTCTC ACGCATTCCG ACAAAATCAA TCTGCAATCT GAAAGCTTTC AGGCAACTGT GGGTTGCATT CAGAGACTGA GAGATAAGTT TCAAGCTTTA GTGGAATTTT ATCCGACTGT ATTCACAGTT GATGCAAGAT CATCTCCTTC GGTTAGTAAA CTCACACATC ATATTCGGAT GACTAGCAAA GCCATCCTTC AAAGAGTTCC TCGGGTTTAT CAGCTCTGCA ATGATATGGT ACAGCTCTTA TCAGACTGGA GATCAGAGAA TTCAAACAAA CCTATTATGA GATGGAAAGC CTTTGCAGAT CTCTGCCAGT TTAAGGTTCC TTCCCTGAGA ATAAAGTCCC GCAACGAGAA CATTGAGATT GTGGAGACAA GACGGCAAGC TATAGCCACA TGCCTCCACC AAATAGGAGA GGTGATTTAC TTTGATGACT TGGGCTTTTT GATACTAGAC TACGAATGGT TTTGTGGGGA GGTTCTTACT CAGTTGATAA AGCTTGATGT AAGAAAGCAA AGCACCGGGG AAAGAAATGG GTTTGTGAGC AGGAAAGAGC TAGAGAAGAC TTTGAGAAGT AGTTTACAGA GTCCAATTCC AGGGATGACC TCAAAGGTAC TTGAGCACTT TGATGTGTGT GACCTTGTGA AGATGATGAA GAAAGTAGAA CTTTGCTATG AACAAGACCC TTCCTGTCCA GACTCTTCAT TGTTAGTCCC ATCGATTCTC GAAGAAGGCA GAGGAAAGAC ACAGAAATGG CAGGTAAACA CACACGACTG TGTTTATTCA GGCCGGCATC TCCAGTGCGA TGATTCAAGT CACATGTTTC TCACAGCTGG TTTCTTCCCT CGTTTACAGG CAAGGGATCA AAAGCATTTT TCTGTACATC TTCACAACAG AATCATGGAA CTGAAGAACC AACACGGGGC GACTTATAAT CTTGAGAAGT ACCTCATCTC TATAACGATC CATGGCATTA ACATTAGAGT GGAGCTTGGA GGACAGTTGG GAAATTACAT TGATATTCTT GCTTGCTCGA CAAAGAGCTT GACAGAAACT CTGAGGCTCA TTCACCAGCT AATCATTCCG GCTATCCAGA GCAGCTGCCA AGGTGTAATC CTCCTTGAGC ACATCATAAG ACCACAATGC GTCCAGGACT TGACTCCACC GCGATTCCGA CAAAGTCAGT TTGTTTCCCT CCACAGACTA AAAGAAGCAT TGTCATCAGT TCCTGCAGAA ACTATGTATG ACTATCAACA CACATGGGAC TCTGTCCTAG ATTCAGGTAA GACTGTTCTA AGAGCCGGAT TTGATTTAGC CCGCAACCTC CTCTCTGATG ATGATTTCAG AGAAGTATTG CAAAGAAGGT ACCATGATCT GCACAACTTA GCTCAAGAAC TACAAGTTCC CACCGACGAA AACCCCGAAG CAGATAATCA TGTTCCGGTG ACCAATGAGC TGGAAAAAGT TGATCCTAGC TTCGGTGGAA TCGCTAAGGG AGTAGAAGCA GTACTTCAGA GACTGAAGAT TATCGAGCAA GAGATACGAG ACCTGAAACA AGAAATCCAA GGACTGAGAT ACTATGAGCA CAGACTTCTG ATCCAGCTTC ATCACAAAGT GAATTACCTT GTCAACTATA ATGTCCAGAT GGATGAAAGA CAAGTTCCAA ACATGTTTTA CTTCATCAGA GCAGAGAACT ACGGGAGACG ACTGATCACA TCTATGGTTC CTGGCATGGT TGCTCTAAGG ATACACATGT TATGCGAATT TAGACGGGAA ATGCACGTCG TAGAAGATCA GCTTGGGTGT GACGTGATGC AGATAGACAA CCAAGCTGTG AAGTGCTTGG CTCCATACAT GACAAACTTC ATGAAACTGG TGACTTTTGC ATTGAGGATA GGAGCAAACT GGGCAGCTGG GATGGGACAC ATGATACCTG ACTTGGGCCA CGCTATCGCT CACCTAGCCA ACCCAGCTGT CATGACTGGA GCGGCCGGAG CTGCAGGAGC CATGGGGGTC GCTGTTGCAT TGGGTAGGAA CCGAGGCAGA GATAGAGATA TTCAGGAACA AGACCAAAGA GCAGCTCAAC AGTGGCTCAT TGATTACTTG AGGGAACAGA ATTGCTCAAC AGGAAGGGAT ATTGCAGAAA AATTTGGCCT GTGGCGAGTT AGATACAGAG ACGATGGGTC CATCGCCTGG ATCTGCAAAC GGCATATGAT CACCAGAGCC AATGAAGTGA TCCAAGTTCC TCTCTAATGG TTGCTAGCTA GCTACAAATG AACAGTAAGA GAAAGTAGTT TAATTAGGCA AAACCATTTT CATTAAATTC TGTTGCCTTA TGATAATGCT TTGAATCTTT TACTTATTTA CTGTTGAATC CCTT |
| Length | 4294 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 16040597.. 16044946 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G55540.1 |
| Description | tornado 1 |
| TAIR curator summary | Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. |
| Alias | [LOP1][TRN1][LOPPED 1][TORNADO 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.58258 |
Ahg473392 | early-responsive to dehydration stress protein (ERD4) |
| 21.8174 |
Ahg496959 | RNA binding;GTP binding |
| 30.2985 |
Ahg471223 | Leucine-rich repeat protein kinase family protein |
| 30.7896 |
Ahg480193 | O-Glycosyl hydrolases family 17 protein |
| 34.2929 |
Ahg919920 | Leucine-rich repeat protein kinase family protein |
| 34.641 |
Ahg486978 | RHO guanyl-nucleotide exchange factor 7 |
| 46.6476 |
Ahg353556 | Protein kinase superfamily protein |
| 49.9199 |
Ahg923183 | receptor-like kinase 1 |
| 51.643 |
Ahg488255 | Leucine-rich repeat protein kinase family protein |
| 52.45 |
Ahg484275 | Asparagine synthase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|