| Annotation |
|---|
| Description | jgi|Araly1|496103|fgenesh2_kg.8__1919__AT5G59710.1 |
| Sequence |
TTTTCCGATT TAGGGCACCA AATTGATACA AAATCTCCGC TCTTCCCAAT TTACGAAACC TCACGAAAAT CTTCTTCGGA TTCTTAACCC TTTCTCTCAA TTCTTCTTCC AGGGTTTTCG AATTGAGCAC TGTTCTCTTC TTCTTCTTCT TCCTCCGTAC GCATCCTTCT CCTTTTACTG TGAGTGTGAA CAGATTCAAA ACACGCGATT TTTAGGGTTT TCGGAGTTCA ATTTCCTTAT CCTACTATTG AGTTTGCATC GCGATAGCTG AATTTTGAGA TCCTGTGTTG TTTACTCAGT CGTAATTTCA CAACAGCTGA ATTACGCTTC CGTTGATTGG ATCCTCGTTA GTTTTTTTTT TCTCGTTCTG AATCGTTCCT AGACTTCTGA TTTCCTGCTA GAAGTTTGTT TCATGGTTGC TGATTCATTA TCTTCTTGTT TCTGGATGAA AAGTTTTGCT TGGGATAAAC CTTGAAAGAA TGAGAATTTC AATCTTACTT TGAACAATAT GTAGTTTATA CAGTAAATTC GTCTGGTGTT GCACCATGGT TAATAAGATT TATGTCTCCT TTGTTTAGTT TATAGAATTC TTCTTTTTTC AGGCTATTCA TTTCTGTGCG TCGTTTATTC CCTCTCAGAT TGTAGGTGGT GGTTCGCGTC TTGTCGCCGA ATGATATTTT GCCTCACTTG ATTATCAGTC AGTTCGTGCA ATGTCAAACC TTCATTCATC TCTCAATGGT TCAGCTTCAA ATTTACCAGA TGGGTCTGGC AGATCGTTTA CTGCTTCTTA TTCTGGACAA TCTGGTGCAC CGTCTCCCTC TTTTCATCAT ACTGGAAATC TTCAGGGACT TCATAATATT CATGGGAACT ATAATGTCGG GAACATGCAA GGTACACTTA CATCAAGAAA CTCAAGTATG AATAGTATAC CATCTGCCGG GGTTCAACAA CCTAATGGGG GTTTTTCCAG TGGAAGATTT GCTTCAAATA ATCTACCTGT TAATCTATCT CAGATGTCTC ATGGTAGCTC TCATGGGCAT TCTGGAATCC CAAATAGAGG AGTTCTTAAT GTTGTTGGCA ACCCTGGATT CAATAGTACC GCTAATGGAG TTGGTGGTTC TATTCCTGGA ATTCTCTCTA CATCTGCAGG ACTCAGTAAT CGGAGTAGTG TTCCAGGGAT GGGAATGTCC CAATTGTTGG GAAATTCAGG TCCTCGGATA ACAAATTCAA TGGGAAACAT GGTTGGTGGA GGTAACTTGG GGAGGAATAT TAGCTCTGGT GGATTATCTA TTCCTGGTCT GTCTTCTCGA CTAAATTTGG CAGCAAATAG CGGATCAGGA TTAAATGTAC AGGGACAGAA CCGAATGCTG GGTGGAGTAC TTCCTCAAGG ATCTCAGGTC ATGTCTATGC TGGGGAACTC CTATCATGCT GGTGGTGGCC CACTTTCGCA GAACCATGTT CAGTCAGTTA ACAATATGAT GCTCAGTGAT CACTCTAACG ATAGCTCTCT TTTTGACATC AACAACGATT TTCCCCAGCT GACAAGTCGT CCTGGATCTG CTGGTGGCAC TCAAGGACAA CTAGGCTCTT TGAGGAAACA AGGTTTAGGT GTCCCACTTG TCCAACAAAA CCAGGAGTTC AGCATCCAAA ATGAAGACTT TCCTGCTCTA CCTGGATATA AAGGTGGTAA TTCTGATTAT CCTATGGATT TGCATCAGAA AGAACAACTC CATGACAATG CTATGTCAAT GATGCACTCT CAAAACTTTT CTATGGGTAG ATCTGGTGGT TTCAACTTGG GAGCAACATA TTCATCACAT CGTCCACAAC AACAGCCACA ACATACTTCA TCTACTGGTG GGCTACAGGG TCTTGGCCTT AGACCTCTAA GCTCCCCCAA TGCAGTTTCC AGTATTGGTT ATGATCAGCT TATACAGCAG TATCAGCAAC ATCAAAATCA ATCCCAGTTT CCTGTGCAAC AGATGTCATC AATCAACCAA TTTAGAGATT CTGAGATGAA ATCGACACAG TCAGAGGCAG ATCCTTTTTG CTTACTTGGC TTGTTAGACG TACTAAACAG GAGCAACCCT GAATTGACCT CACTTGCTCT TGGCATCGAC TTGACGACAC TAGGATTGGA TTTGAATTCA AATGGAAATC TTTACAAGAC ATTTGCTTCC CCCTGGACCA ATGAACCGGC AAAGAGCGAG GTCGAGTTCA CAGTACCAAA TTGTTACTAC TCCACACCAC CTCCGCCTCT AACTCGAGCT AGTTTCAAAA GATTCTCCTA CGAGTTATTG TTCTACACAT TTTACAGTAT GCCGAAAGAT GAAGCACAGC TATTCGCAGC AGATGAACTT TACGAAAGAG GTTGGTTTTA CCACAAGGAA CTCAGATTAT GGTTCTTCAG AGTTGGGGAA CCTTTAGTCA GGGCAGCTAC ATATGAAAGA GGAACATATG AATACCTCGA TCCAAATTCG TTCAAAACAG TCAGAAAGGA ACATTTTGTT GTCAAGTACG AGCTCATGGA AAAGAGACCA AGCTTGCTGC AGCATTGACG ACATGTAGGT TTGTTCAATT AGTAGCATCT TTACAATGTA AAGCTTTTCT CTTCATTTCT ATCTCTTTGT CTCTTTCGTT CATGCAAGTT TTATTGATTA GAAACCAAAC CATCTCACAT TTTCAATTTT TAACCCCAAG TTTCCCAAAA AGGTAATCAC AGTTACTTTC |
| Length | 2730 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 18048181.. 18052664 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G59710.1 |
| Description | VIRE2 interacting protein 2 |
| TAIR curator summary | Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator. |
| Alias | [AtVIP2][NOT2b][VIP2][Negative on TATA less2b][VIRE2 interacting protein 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.64575 |
Ahg472327 | ARID/BRIGHT DNA-binding domain-containing protein |
| 3.4641 |
Ahg908776 | cleavage stimulating factor 64 |
| 3.60555 |
Ahg493917 | succinate dehydrogenase 2-2 |
| 4.69042 |
Ahg470311 | Small nuclear ribonucleoprotein family protein |
| 5.47723 |
Ahg488121 | 5-formyltetrahydrofolate cycloligase |
| 8 |
Ahg931448 | casein kinase I-like 5 |
| 8 |
Ahg947127 | Haem oxygenase-like, multi-helical |
| 10.247 |
Ahg943403 | C2H2 and C2HC zinc fingers superfamily protein |
| 10.4881 |
Ahg478929 | Lactate/malate dehydrogenase family protein |
| 12.1655 |
Ahg486402 | UDP-galactose transporter 6 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|