| Annotation |
|---|
| Description | jgi|Araly1|496925|fgenesh2_kg.8__2741__AT5G66750.1 |
| Sequence |
TTTTGAATTT GCTCTCCAAA AGCGACGGAG ACTGTTCAGC TCGGTGGTTT CTCCCGCCGT TTGGGTTTTT CTTACCGGAA TTTCCTTCTC CTTCGATGGT TAGTCTGCGC TCCAAAAAAT TTATTCCGGC TTCGGAAATG GTCAGCGACG GGAAAACGGA GAAAGATGCG TCTGGTGATT CACCCACTTC TGTTCTCAAC GAAGAGGAAA ACTGTGAGGA GAAAAGTGTT ACTGTTGTAG AGGAAGAGAT ACTTTTAGCC AAAAATGGAG ATTCATCTCT TATTTCTGAA GCCATGGCTC AGGAGGAAGA GAAGCTGCTC AAAATTCGGG AAGATGAAGA GAAAGCTAAC AATGCTGGAT CTGCTGTTGC TCCTGATCTG AATGAAACTC AGTTTACTAA ACTCGATGAG CTCTTGACGC AAACTCAGCT CTACTCTGAG TTTCTCCTTG AGAAAATGGA GGATATCACC ATTAATGGGA TAGAAGGTGA GAGCCAAAAA GCTGAGCCTG AGAAGACTGG TCGTGGACGC AAACGAAAGG CTGCTTCTCA GTACAACAAT ACTAAGGCTA AGAGAGCGGT TGCTGCTATG ATTTCAAGAT CTAAAGAAGA TGGTGACACC ACCAACTCAG ATCTGACAGA GGAAGAAAGA GTCATGAAAG AGCAGGGTGA ACTATGTCCT CTTCTCACTG GTGGACAGTT AAAGTCTTAT CAGCTTAAAG GTGTCAAATG GCTAATATCA TTGTGGCAGA ATGGTTTGAA TGGAATCTTA GCTGATCAAA TGGGACTTGG AAAGACAATT CAAACGATTG GTTTCTTATC ACATCTGAAA GGAAATGGGT TGGACGGTCC ATATCTAGTC ATAGCTCCAC TGTCTACACT TTCAAATTGG TTCAATGAGA TTGCTAGGTT CACGCCTTCC ATCAATGCAA TCATCTACCA TGGGGATAAA AAACAAAGGG ATGAGCTCAG GAGGAAGCAC ATGCCCAAAA CTGTTGGTCC GAAGTTCCCT ATAGTTATTA CTTCATATGA GGTTGCTATG AATGATGCTA AAAGAAATCT GCGGCACTAT CCATGGAAAT ATGTTGTTAT TGATGAGGGC CACAGGTTGA AAAACCACAA GTGTAAATTG TTGAGGGAAC TAAAACACTT GAAGATGGAT AACAAACTTC TGCTGACAGG AACACCTCTG CAAAATAATT TGTCTGAGCT TTGGTCACTG TTGAATTTTA TTCTGCCTGA CATCTTTACA TCGCATGATG AATTTGAATC ATGGTTTGAT TTTTCTGAAA AGAACAAAAA CGAAGCAACC AAGGAAGAAG AAGAGAAAAG AAGAGCTCAA GTTGTTTCCA AACTTCATGG TATACTACGA CCATTCATCC TTCGAAGAAT GAAATGTGAT GTTGAGCTCT CGCTTCCGCG GAAAAAGGAG ATTATAATGT ATGCTACAAT GACTGATCAT CAGAAAAAGT TCCAGGAACA TCTCGTGAAT CACACGTTGG AAGCACATCT TGGAGAGAAT GCTATCCGAG GTCAAGGCTG GAAGGGAAAG CTTAACAACC TGATGGTTCA ACTTCGGAAG AACTGCAACC ATCCTGACCT TCTCCAGGGG CAAATAGATG GTTCATATCT CTACCCTCCT GTTGAAGAAA TTGTTGGACA GTGTGGTAAA TTCCGCTTAT TGGAGAGATT ACTTGTTCGG TTATTTGCCA ATAATCACAA AGTCCTAATC TTCTCCCAAT GGACGAAACT CTTGGACATA ATGGATTACT ACTTCAGTGA GAAGGGGTTT GAGGTTTGCA GAATCGATGG CAATGTGAAG CTGGATGAAA GGAGAAGACA GATCAAAGAT TTCAGTGATG AGAAGAGCAG CTGTAGTATC TTTCTCCTCA GTACCAGAGC TGGAGGACTC GGAATCAATC TTACTGCTGC TGATACATGC ATCCTCTACG ACAGCGACTG GAACCCTCAA ATGGACTTGC AAGCCATGGA CAGATGCCAC AGAATCGGGC AGACGAAACC TGTTCATGTT TATAGGCTTT CAACGGCTCA GTCGGTAGAG ACCCGGGTTC TGAAACGAGC GTACAGCAAG CTCAAGCTGG AACATGTGGT TATTGGCAAA GGGCAGTTTC ATCAAGAACG TGCCAAGTCT TCAACACCTC TAGAGGAAGA GGACATATTG GCGTTGCTTA AGGAAGATGA AACTGCTGAA GATAAACTGA TACAAACCGA TATAAGCGAT GAGGATCTGG ACAGGTTGCT TGACCGGAGT GACCTGACAG TTACTGCAAC GGGGGAGACA CAAGCTGATG AAGCTTTTCC AGTGAAGGGT CCAGGTTGGG AAGTGGTCCT GCCTAGTTCG GGAGGAATGC TGTCTTCCCT GAACAGTTAG GACCCATTAA TTTTTTCTTT TTTTCCGGAA CATGACTCGG TTACTTTTGG CTGGAAGGAT TTGATTATTA GAGGGATCGG AAGTTTTTGT AAGTTAAAGA ACTCACTTAA TAAAACCCTG AAAACATGAG AGTTAATGGT GAATAGCTCT CAATGTGATG AAAACAATTG GCCCTCTG |
| Length | 2568 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 21256730.. 21260894 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G66750.1 |
| Description | chromatin remodeling 1 |
| TAIR curator summary | Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation. |
| Alias | [ATDDM1][CHA1][CHR01][CHR1][DDM1][SOM1][SOM4][CHROMATIN REMODELING 1][chromatin remodeling 1][DECREASED DNA METHYLATION 1][SOMNIFEROUS 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.4881 |
Ahg948807 | Helicase protein with RING/U-box domain |
| 11.3137 |
Ahg904498 | |
| 12.0416 |
Ahg472719 | galactosyltransferase1 |
| 12.49 |
Ahg496879 | Leucine-rich repeat protein kinase family protein |
| 13.4164 |
Ahg470351 | targeting protein for XKLP2 |
| 15.8745 |
Ahg479545 | Protein of unknown function (DUF1666) |
| 16.7332 |
Ahg944068 | Integrase-type DNA-binding superfamily protein |
| 21.4009 |
Ahg930445 | topoisomerase II |
| 21.9773 |
Ahg494222 | Pectin lyase-like superfamily protein |
| 22.7156 |
Ahg483869 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|