Detail



ID : Ahg895385

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|895385|Al_scaffold_0006_3381
Sequence
ATGGCCTATA ACAATTTCAC CCGCCTCGAT GCTCAATCCG CCGCCGAGAA AGCCGTCTCA GTGATCGAAT TAGGTTACGA TCTCTGCTCT GATGTTCGTT TCTCCGCTTG TAAAACTACA CTAGACGGTT CCAGGTTAGT CGAAATCGAC CCGACCCGGA ACCGTGACTT AGTCTTCCCC GGTGGGATCG TCGTTAACAA CGTCTCGAGC TCTATTAAGT GCGATAAAGT TGAACGTACT CGATTACGCT CCGATATACT CTCTTTTAAT CAGATGTCGG AGAAGTTTAA TCAAGATATG TGTCTCTCCG GGAAGATTCC GCCGGGGATG TTTAATAATA TGTTTGCGTT TAGTAAATGT TGGCCTAAAG ATGCGAGCTC TGTGAAGAAT TTAGCTTATG ATGGTTGGTT CATTAGCTTG TATATACGTG TTGAGATTGT TAGGAAGCAA TTGACTCTAC GTGATGAAGT GAAACGTGAG GTTCCTTCTT CTTGGGACTC TGCTTCACTT GCTGGGTTTA TTGAGAAATA TGGTACTCAT GTAGTTGTTG GAGTGAGTAC TAAATTTTAA 
Length570
Protein Sequence
Protein Residue
Map Locationscaffold_6: 20360396.. 20361120
Download Sequence
A.thaliana
AGI-codeAT1G28380.1
DescriptionMAC/Perforin domain-containing protein
TAIR curator summaryThis gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.
Alias[NSL1][necrotic spotted lesions 1]
Gene coexpression
MR
MR Locus Description
4 Virus3817
6.16441 Ahg946600 Family of unknown function (DUF577)
6.16441 Ahg946597 Family of unknown function (DUF577)
15.1658 Virus1087
22.9783 Ahg925795 myb domain protein 90
24.1454 Ahg951679 3-hydroxyacyl-CoA dehydrogenase family protein
24.4949 Ahg932480
26.1534 Virus3909
29.6648 Virus3042
37.7889 Ahg907253
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression